Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS24500 and AZOBR_RS24505 are separated by 102 nucleotides AZOBR_RS24505 and AZOBR_RS24510 are separated by 22 nucleotides
AZOBR_RS24500: AZOBR_RS24500 - N(5) N(10)-methenyltetrahydromethanopterin cyclohydrolase, at 556,557 to 557,546
_RS24500
AZOBR_RS24505: AZOBR_RS24505 - hypothetical protein, at 557,649 to 558,743
_RS24505
AZOBR_RS24510: AZOBR_RS24510 - methylenetetrahydromethanopterin dehydrogenase, at 558,766 to 559,662
_RS24510
Position (kb) 557
558
559 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 556.684 kb on + strand, within AZOBR_RS24500 at 556.684 kb on + strand, within AZOBR_RS24500 at 556.684 kb on + strand, within AZOBR_RS24500 at 556.685 kb on - strand, within AZOBR_RS24500 at 556.685 kb on - strand, within AZOBR_RS24500 at 556.685 kb on - strand, within AZOBR_RS24500 at 556.685 kb on - strand, within AZOBR_RS24500 at 557.242 kb on + strand, within AZOBR_RS24500 at 557.243 kb on - strand, within AZOBR_RS24500 at 557.442 kb on + strand, within AZOBR_RS24500 at 557.442 kb on + strand, within AZOBR_RS24500 at 557.549 kb on + strand at 557.851 kb on + strand, within AZOBR_RS24505 at 558.081 kb on + strand, within AZOBR_RS24505 at 558.081 kb on + strand, within AZOBR_RS24505 at 558.082 kb on - strand, within AZOBR_RS24505 at 558.082 kb on - strand, within AZOBR_RS24505 at 558.082 kb on - strand, within AZOBR_RS24505 at 558.082 kb on - strand, within AZOBR_RS24505 at 558.269 kb on - strand, within AZOBR_RS24505 at 558.346 kb on + strand, within AZOBR_RS24505 at 558.347 kb on - strand, within AZOBR_RS24505 at 559.235 kb on - strand, within AZOBR_RS24510 at 559.559 kb on + strand, within AZOBR_RS24510 at 559.560 kb on - strand, within AZOBR_RS24510 at 559.560 kb on - strand, within AZOBR_RS24510 at 559.560 kb on - strand, within AZOBR_RS24510 at 559.560 kb on - strand, within AZOBR_RS24510 at 559.560 kb on - strand, within AZOBR_RS24510 at 559.649 kb on + strand at 559.649 kb on + strand at 559.649 kb on + strand at 559.649 kb on + strand at 559.650 kb on - strand at 559.650 kb on - strand at 559.650 kb on - strand at 559.650 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 556,684 + AZOBR_RS24500 0.13 +0.6 556,684 + AZOBR_RS24500 0.13 -0.4 556,684 + AZOBR_RS24500 0.13 +0.5 556,685 - AZOBR_RS24500 0.13 -0.3 556,685 - AZOBR_RS24500 0.13 -0.1 556,685 - AZOBR_RS24500 0.13 -0.7 556,685 - AZOBR_RS24500 0.13 +0.8 557,242 + AZOBR_RS24500 0.69 +0.2 557,243 - AZOBR_RS24500 0.69 +0.1 557,442 + AZOBR_RS24500 0.89 -0.2 557,442 + AZOBR_RS24500 0.89 +0.6 557,549 + -2.7 557,851 + AZOBR_RS24505 0.18 -0.3 558,081 + AZOBR_RS24505 0.39 -1.3 558,081 + AZOBR_RS24505 0.39 +0.1 558,082 - AZOBR_RS24505 0.40 -2.8 558,082 - AZOBR_RS24505 0.40 -3.9 558,082 - AZOBR_RS24505 0.40 -0.5 558,082 - AZOBR_RS24505 0.40 -0.7 558,269 - AZOBR_RS24505 0.57 +1.4 558,346 + AZOBR_RS24505 0.64 +0.2 558,347 - AZOBR_RS24505 0.64 +0.3 559,235 - AZOBR_RS24510 0.52 -0.4 559,559 + AZOBR_RS24510 0.88 -1.7 559,560 - AZOBR_RS24510 0.89 -3.5 559,560 - AZOBR_RS24510 0.89 -3.9 559,560 - AZOBR_RS24510 0.89 +0.0 559,560 - AZOBR_RS24510 0.89 +0.7 559,560 - AZOBR_RS24510 0.89 -2.8 559,649 + -1.4 559,649 + -3.3 559,649 + +1.2 559,649 + +2.6 559,650 - -0.5 559,650 - -0.2 559,650 - +0.7 559,650 - +0.7
Or see this region's nucleotide sequence