Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS24300

Experiment: D-Cycloserine 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS24295 and AZOBR_RS24300 are separated by 201 nucleotides AZOBR_RS24295: AZOBR_RS24295 - ribonucleotide-diphosphate reductase subunit beta, at 497,805 to 498,896 _RS24295 AZOBR_RS24300: AZOBR_RS24300 - methylcitrate synthase, at 499,098 to 500,261 _RS24300 Position (kb) 499 500 501Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 498.172 kb on - strand, within AZOBR_RS24295at 498.172 kb on - strand, within AZOBR_RS24295at 498.172 kb on - strand, within AZOBR_RS24295at 498.258 kb on + strand, within AZOBR_RS24295at 498.258 kb on + strand, within AZOBR_RS24295at 498.258 kb on + strand, within AZOBR_RS24295at 498.258 kb on + strand, within AZOBR_RS24295at 498.258 kb on + strand, within AZOBR_RS24295at 498.258 kb on + strand, within AZOBR_RS24295at 498.259 kb on - strand, within AZOBR_RS24295at 498.259 kb on - strand, within AZOBR_RS24295at 498.624 kb on + strand, within AZOBR_RS24295at 498.624 kb on + strand, within AZOBR_RS24295at 498.624 kb on + strand, within AZOBR_RS24295at 498.625 kb on - strand, within AZOBR_RS24295at 498.625 kb on - strand, within AZOBR_RS24295at 498.625 kb on - strand, within AZOBR_RS24295at 498.625 kb on - strand, within AZOBR_RS24295at 498.633 kb on + strand, within AZOBR_RS24295at 498.633 kb on + strand, within AZOBR_RS24295at 498.633 kb on + strand, within AZOBR_RS24295at 498.634 kb on - strand, within AZOBR_RS24295at 498.634 kb on - strand, within AZOBR_RS24295at 498.678 kb on + strand, within AZOBR_RS24295at 498.679 kb on - strand, within AZOBR_RS24295at 498.679 kb on - strand, within AZOBR_RS24295at 498.679 kb on - strand, within AZOBR_RS24295at 498.709 kb on - strand, within AZOBR_RS24295at 498.801 kb on + strandat 499.042 kb on + strandat 499.042 kb on + strandat 499.230 kb on + strand, within AZOBR_RS24300at 499.279 kb on - strand, within AZOBR_RS24300at 499.326 kb on + strand, within AZOBR_RS24300at 499.327 kb on - strand, within AZOBR_RS24300at 499.327 kb on - strand, within AZOBR_RS24300at 499.327 kb on - strand, within AZOBR_RS24300at 499.537 kb on - strand, within AZOBR_RS24300at 499.680 kb on + strand, within AZOBR_RS24300at 499.837 kb on - strand, within AZOBR_RS24300at 499.920 kb on + strand, within AZOBR_RS24300at 499.920 kb on + strand, within AZOBR_RS24300at 499.920 kb on + strand, within AZOBR_RS24300at 499.921 kb on - strand, within AZOBR_RS24300at 500.085 kb on + strand, within AZOBR_RS24300at 500.085 kb on + strand, within AZOBR_RS24300at 500.085 kb on + strand, within AZOBR_RS24300at 500.086 kb on - strand, within AZOBR_RS24300at 500.086 kb on - strand, within AZOBR_RS24300at 500.086 kb on - strand, within AZOBR_RS24300at 500.086 kb on - strand, within AZOBR_RS24300at 500.211 kb on + strandat 500.211 kb on + strandat 500.211 kb on + strandat 500.211 kb on + strandat 500.211 kb on + strandat 500.211 kb on + strandat 500.211 kb on + strandat 500.212 kb on - strandat 500.212 kb on - strandat 500.212 kb on - strandat 500.212 kb on - strandat 500.212 kb on - strandat 500.212 kb on - strandat 500.212 kb on - strandat 500.212 kb on - strandat 500.212 kb on - strandat 500.212 kb on - strandat 500.376 kb on + strandat 500.376 kb on + strandat 500.376 kb on + strandat 500.377 kb on - strandat 500.377 kb on - strandat 500.647 kb on - strandat 501.211 kb on + strandat 501.212 kb on - strandat 501.212 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml
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498,172 - AZOBR_RS24295 0.34 -1.6
498,172 - AZOBR_RS24295 0.34 -1.5
498,172 - AZOBR_RS24295 0.34 -3.5
498,258 + AZOBR_RS24295 0.41 +0.6
498,258 + AZOBR_RS24295 0.41 -1.2
498,258 + AZOBR_RS24295 0.41 -1.6
498,258 + AZOBR_RS24295 0.41 -0.3
498,258 + AZOBR_RS24295 0.41 -0.6
498,258 + AZOBR_RS24295 0.41 -0.5
498,259 - AZOBR_RS24295 0.42 -1.5
498,259 - AZOBR_RS24295 0.42 +0.3
498,624 + AZOBR_RS24295 0.75 -0.5
498,624 + AZOBR_RS24295 0.75 -0.9
498,624 + AZOBR_RS24295 0.75 -1.1
498,625 - AZOBR_RS24295 0.75 -0.8
498,625 - AZOBR_RS24295 0.75 +0.1
498,625 - AZOBR_RS24295 0.75 -0.3
498,625 - AZOBR_RS24295 0.75 +0.7
498,633 + AZOBR_RS24295 0.76 -0.4
498,633 + AZOBR_RS24295 0.76 +0.2
498,633 + AZOBR_RS24295 0.76 -2.4
498,634 - AZOBR_RS24295 0.76 -1.7
498,634 - AZOBR_RS24295 0.76 -2.6
498,678 + AZOBR_RS24295 0.80 -0.9
498,679 - AZOBR_RS24295 0.80 -0.6
498,679 - AZOBR_RS24295 0.80 +1.0
498,679 - AZOBR_RS24295 0.80 -0.0
498,709 - AZOBR_RS24295 0.83 +0.6
498,801 + -5.0
499,042 + +1.0
499,042 + -0.1
499,230 + AZOBR_RS24300 0.11 +0.1
499,279 - AZOBR_RS24300 0.16 +0.8
499,326 + AZOBR_RS24300 0.20 -1.0
499,327 - AZOBR_RS24300 0.20 -3.8
499,327 - AZOBR_RS24300 0.20 -1.5
499,327 - AZOBR_RS24300 0.20 +0.4
499,537 - AZOBR_RS24300 0.38 +1.1
499,680 + AZOBR_RS24300 0.50 -3.6
499,837 - AZOBR_RS24300 0.63 +1.1
499,920 + AZOBR_RS24300 0.71 -2.4
499,920 + AZOBR_RS24300 0.71 -1.2
499,920 + AZOBR_RS24300 0.71 -0.1
499,921 - AZOBR_RS24300 0.71 +0.6
500,085 + AZOBR_RS24300 0.85 -0.2
500,085 + AZOBR_RS24300 0.85 -1.1
500,085 + AZOBR_RS24300 0.85 +0.0
500,086 - AZOBR_RS24300 0.85 +0.0
500,086 - AZOBR_RS24300 0.85 +0.3
500,086 - AZOBR_RS24300 0.85 -0.1
500,086 - AZOBR_RS24300 0.85 +0.2
500,211 + +0.7
500,211 + +0.1
500,211 + +1.2
500,211 + +0.5
500,211 + +0.3
500,211 + +1.9
500,211 + +1.0
500,212 - -3.3
500,212 - +0.4
500,212 - -2.8
500,212 - -1.9
500,212 - -1.2
500,212 - +1.0
500,212 - +1.2
500,212 - +1.7
500,212 - +0.1
500,212 - +0.0
500,376 + -0.3
500,376 + +1.2
500,376 + -0.4
500,377 - -1.6
500,377 - +0.0
500,647 - -0.4
501,211 + -0.2
501,212 - +0.1
501,212 - -0.3

Or see this region's nucleotide sequence