Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS24290 and AZOBR_RS24295 are separated by 53 nucleotides AZOBR_RS24295 and AZOBR_RS24300 are separated by 201 nucleotides
AZOBR_RS24290: AZOBR_RS24290 - ribonucleotide-diphosphate reductase subunit alpha, at 495,877 to 497,751
_RS24290
AZOBR_RS24295: AZOBR_RS24295 - ribonucleotide-diphosphate reductase subunit beta, at 497,805 to 498,896
_RS24295
AZOBR_RS24300: AZOBR_RS24300 - methylcitrate synthase, at 499,098 to 500,261
_RS24300
Position (kb) 497
498
499 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 497.293 kb on + strand, within AZOBR_RS24290 at 497.293 kb on + strand, within AZOBR_RS24290 at 497.293 kb on + strand, within AZOBR_RS24290 at 497.293 kb on + strand, within AZOBR_RS24290 at 497.294 kb on - strand, within AZOBR_RS24290 at 497.294 kb on - strand, within AZOBR_RS24290 at 497.294 kb on - strand, within AZOBR_RS24290 at 497.629 kb on + strand at 497.629 kb on + strand at 497.629 kb on + strand at 497.629 kb on + strand at 497.629 kb on + strand at 497.629 kb on + strand at 497.630 kb on - strand at 497.630 kb on - strand at 497.630 kb on - strand at 497.630 kb on - strand at 497.630 kb on - strand at 497.630 kb on - strand at 497.632 kb on + strand at 497.632 kb on + strand at 497.632 kb on + strand at 497.633 kb on - strand at 497.883 kb on + strand at 497.883 kb on + strand at 497.910 kb on + strand at 497.910 kb on + strand at 497.910 kb on + strand at 497.911 kb on - strand at 497.916 kb on + strand, within AZOBR_RS24295 at 498.078 kb on + strand, within AZOBR_RS24295 at 498.078 kb on + strand, within AZOBR_RS24295 at 498.091 kb on - strand, within AZOBR_RS24295 at 498.091 kb on - strand, within AZOBR_RS24295 at 498.172 kb on - strand, within AZOBR_RS24295 at 498.172 kb on - strand, within AZOBR_RS24295 at 498.172 kb on - strand, within AZOBR_RS24295 at 498.258 kb on + strand, within AZOBR_RS24295 at 498.258 kb on + strand, within AZOBR_RS24295 at 498.258 kb on + strand, within AZOBR_RS24295 at 498.258 kb on + strand, within AZOBR_RS24295 at 498.258 kb on + strand, within AZOBR_RS24295 at 498.258 kb on + strand, within AZOBR_RS24295 at 498.259 kb on - strand, within AZOBR_RS24295 at 498.259 kb on - strand, within AZOBR_RS24295 at 498.624 kb on + strand, within AZOBR_RS24295 at 498.624 kb on + strand, within AZOBR_RS24295 at 498.624 kb on + strand, within AZOBR_RS24295 at 498.625 kb on - strand, within AZOBR_RS24295 at 498.625 kb on - strand, within AZOBR_RS24295 at 498.625 kb on - strand, within AZOBR_RS24295 at 498.625 kb on - strand, within AZOBR_RS24295 at 498.633 kb on + strand, within AZOBR_RS24295 at 498.633 kb on + strand, within AZOBR_RS24295 at 498.633 kb on + strand, within AZOBR_RS24295 at 498.634 kb on - strand, within AZOBR_RS24295 at 498.634 kb on - strand, within AZOBR_RS24295 at 498.678 kb on + strand, within AZOBR_RS24295 at 498.679 kb on - strand, within AZOBR_RS24295 at 498.679 kb on - strand, within AZOBR_RS24295 at 498.679 kb on - strand, within AZOBR_RS24295 at 498.709 kb on - strand, within AZOBR_RS24295 at 498.801 kb on + strand at 499.042 kb on + strand at 499.042 kb on + strand at 499.230 kb on + strand, within AZOBR_RS24300 at 499.279 kb on - strand, within AZOBR_RS24300 at 499.326 kb on + strand, within AZOBR_RS24300 at 499.327 kb on - strand, within AZOBR_RS24300 at 499.327 kb on - strand, within AZOBR_RS24300 at 499.327 kb on - strand, within AZOBR_RS24300 at 499.537 kb on - strand, within AZOBR_RS24300 at 499.680 kb on + strand, within AZOBR_RS24300 at 499.837 kb on - strand, within AZOBR_RS24300
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 497,293 + AZOBR_RS24290 0.76 -1.9 497,293 + AZOBR_RS24290 0.76 -0.5 497,293 + AZOBR_RS24290 0.76 -0.2 497,293 + AZOBR_RS24290 0.76 -0.8 497,294 - AZOBR_RS24290 0.76 +0.9 497,294 - AZOBR_RS24290 0.76 -2.2 497,294 - AZOBR_RS24290 0.76 -0.0 497,629 + -0.5 497,629 + -0.3 497,629 + +0.5 497,629 + -2.5 497,629 + -0.6 497,629 + +3.1 497,630 - -0.8 497,630 - -1.3 497,630 - +0.4 497,630 - -2.5 497,630 - -1.0 497,630 - +0.1 497,632 + -1.2 497,632 + -1.1 497,632 + +0.0 497,633 - -0.7 497,883 + -1.4 497,883 + -0.0 497,910 + +0.1 497,910 + -1.2 497,910 + -0.1 497,911 - -2.8 497,916 + AZOBR_RS24295 0.10 -1.2 498,078 + AZOBR_RS24295 0.25 +0.0 498,078 + AZOBR_RS24295 0.25 -0.3 498,091 - AZOBR_RS24295 0.26 +0.2 498,091 - AZOBR_RS24295 0.26 -0.0 498,172 - AZOBR_RS24295 0.34 -1.6 498,172 - AZOBR_RS24295 0.34 -1.5 498,172 - AZOBR_RS24295 0.34 -3.5 498,258 + AZOBR_RS24295 0.41 +0.6 498,258 + AZOBR_RS24295 0.41 -1.2 498,258 + AZOBR_RS24295 0.41 -1.6 498,258 + AZOBR_RS24295 0.41 -0.3 498,258 + AZOBR_RS24295 0.41 -0.6 498,258 + AZOBR_RS24295 0.41 -0.5 498,259 - AZOBR_RS24295 0.42 -1.5 498,259 - AZOBR_RS24295 0.42 +0.3 498,624 + AZOBR_RS24295 0.75 -0.5 498,624 + AZOBR_RS24295 0.75 -0.9 498,624 + AZOBR_RS24295 0.75 -1.1 498,625 - AZOBR_RS24295 0.75 -0.8 498,625 - AZOBR_RS24295 0.75 +0.1 498,625 - AZOBR_RS24295 0.75 -0.3 498,625 - AZOBR_RS24295 0.75 +0.7 498,633 + AZOBR_RS24295 0.76 -0.4 498,633 + AZOBR_RS24295 0.76 +0.2 498,633 + AZOBR_RS24295 0.76 -2.4 498,634 - AZOBR_RS24295 0.76 -1.7 498,634 - AZOBR_RS24295 0.76 -2.6 498,678 + AZOBR_RS24295 0.80 -0.9 498,679 - AZOBR_RS24295 0.80 -0.6 498,679 - AZOBR_RS24295 0.80 +1.0 498,679 - AZOBR_RS24295 0.80 -0.0 498,709 - AZOBR_RS24295 0.83 +0.6 498,801 + -5.0 499,042 + +1.0 499,042 + -0.1 499,230 + AZOBR_RS24300 0.11 +0.1 499,279 - AZOBR_RS24300 0.16 +0.8 499,326 + AZOBR_RS24300 0.20 -1.0 499,327 - AZOBR_RS24300 0.20 -3.8 499,327 - AZOBR_RS24300 0.20 -1.5 499,327 - AZOBR_RS24300 0.20 +0.4 499,537 - AZOBR_RS24300 0.38 +1.1 499,680 + AZOBR_RS24300 0.50 -3.6 499,837 - AZOBR_RS24300 0.63 +1.1
Or see this region's nucleotide sequence