Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS24065 and AZOBR_RS24070 are separated by 296 nucleotides AZOBR_RS24070 and AZOBR_RS24075 are separated by 72 nucleotides AZOBR_RS24075 and AZOBR_RS24080 are separated by 116 nucleotides
AZOBR_RS24065: AZOBR_RS24065 - aspartate aminotransferase, at 437,511 to 438,689
_RS24065
AZOBR_RS24070: AZOBR_RS24070 - acetyl-CoA hydrolase, at 438,986 to 440,479
_RS24070
AZOBR_RS24075: AZOBR_RS24075 - hypothetical protein, at 440,552 to 440,905
_RS24075
AZOBR_RS24080: AZOBR_RS24080 - methyl-accepting chemotaxis protein, at 441,022 to 442,725
_RS24080
Position (kb) 438
439
440
441 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 438.073 kb on + strand, within AZOBR_RS24065 at 438.073 kb on + strand, within AZOBR_RS24065 at 438.304 kb on + strand, within AZOBR_RS24065 at 438.305 kb on - strand, within AZOBR_RS24065 at 438.305 kb on - strand, within AZOBR_RS24065 at 438.305 kb on - strand, within AZOBR_RS24065 at 438.313 kb on + strand, within AZOBR_RS24065 at 438.314 kb on - strand, within AZOBR_RS24065 at 438.496 kb on + strand, within AZOBR_RS24065 at 438.496 kb on + strand, within AZOBR_RS24065 at 438.496 kb on + strand, within AZOBR_RS24065 at 438.497 kb on - strand, within AZOBR_RS24065 at 438.755 kb on - strand at 438.755 kb on - strand at 438.881 kb on + strand at 438.881 kb on + strand at 438.882 kb on - strand at 438.899 kb on + strand at 438.990 kb on - strand at 438.990 kb on - strand at 438.990 kb on - strand at 439.520 kb on + strand, within AZOBR_RS24070 at 439.520 kb on + strand, within AZOBR_RS24070 at 439.520 kb on + strand, within AZOBR_RS24070 at 439.521 kb on - strand, within AZOBR_RS24070 at 439.521 kb on - strand, within AZOBR_RS24070 at 439.521 kb on - strand, within AZOBR_RS24070 at 439.521 kb on - strand, within AZOBR_RS24070 at 439.521 kb on - strand, within AZOBR_RS24070 at 439.841 kb on + strand, within AZOBR_RS24070 at 439.841 kb on + strand, within AZOBR_RS24070 at 439.841 kb on + strand, within AZOBR_RS24070 at 439.842 kb on - strand, within AZOBR_RS24070 at 439.842 kb on - strand, within AZOBR_RS24070 at 439.842 kb on - strand, within AZOBR_RS24070 at 439.842 kb on - strand, within AZOBR_RS24070 at 439.842 kb on - strand, within AZOBR_RS24070 at 439.937 kb on + strand, within AZOBR_RS24070 at 439.967 kb on + strand, within AZOBR_RS24070 at 439.967 kb on + strand, within AZOBR_RS24070 at 439.967 kb on + strand, within AZOBR_RS24070 at 439.968 kb on - strand, within AZOBR_RS24070 at 439.968 kb on - strand, within AZOBR_RS24070 at 439.968 kb on - strand, within AZOBR_RS24070 at 440.073 kb on - strand, within AZOBR_RS24070 at 440.073 kb on - strand, within AZOBR_RS24070 at 440.073 kb on - strand, within AZOBR_RS24070 at 440.073 kb on - strand, within AZOBR_RS24070 at 440.372 kb on + strand at 440.706 kb on + strand, within AZOBR_RS24075 at 440.707 kb on - strand, within AZOBR_RS24075 at 440.707 kb on - strand, within AZOBR_RS24075 at 440.793 kb on + strand, within AZOBR_RS24075 at 440.941 kb on + strand at 440.941 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 438,073 + AZOBR_RS24065 0.48 +0.7 438,073 + AZOBR_RS24065 0.48 +1.5 438,304 + AZOBR_RS24065 0.67 -1.9 438,305 - AZOBR_RS24065 0.67 +0.4 438,305 - AZOBR_RS24065 0.67 +1.0 438,305 - AZOBR_RS24065 0.67 -1.6 438,313 + AZOBR_RS24065 0.68 +0.8 438,314 - AZOBR_RS24065 0.68 +0.6 438,496 + AZOBR_RS24065 0.84 +1.6 438,496 + AZOBR_RS24065 0.84 +1.0 438,496 + AZOBR_RS24065 0.84 +0.2 438,497 - AZOBR_RS24065 0.84 -0.7 438,755 - -0.6 438,755 - -1.8 438,881 + +0.4 438,881 + -3.5 438,882 - -0.1 438,899 + -0.9 438,990 - -2.3 438,990 - +0.1 438,990 - +0.4 439,520 + AZOBR_RS24070 0.36 +1.3 439,520 + AZOBR_RS24070 0.36 -2.7 439,520 + AZOBR_RS24070 0.36 +0.6 439,521 - AZOBR_RS24070 0.36 -1.3 439,521 - AZOBR_RS24070 0.36 +1.5 439,521 - AZOBR_RS24070 0.36 -0.4 439,521 - AZOBR_RS24070 0.36 -0.0 439,521 - AZOBR_RS24070 0.36 -0.4 439,841 + AZOBR_RS24070 0.57 -0.3 439,841 + AZOBR_RS24070 0.57 -1.7 439,841 + AZOBR_RS24070 0.57 +2.0 439,842 - AZOBR_RS24070 0.57 +1.2 439,842 - AZOBR_RS24070 0.57 -0.3 439,842 - AZOBR_RS24070 0.57 -0.0 439,842 - AZOBR_RS24070 0.57 -0.7 439,842 - AZOBR_RS24070 0.57 +1.5 439,937 + AZOBR_RS24070 0.64 -0.2 439,967 + AZOBR_RS24070 0.66 +0.4 439,967 + AZOBR_RS24070 0.66 -4.1 439,967 + AZOBR_RS24070 0.66 -0.6 439,968 - AZOBR_RS24070 0.66 -0.3 439,968 - AZOBR_RS24070 0.66 +0.5 439,968 - AZOBR_RS24070 0.66 +0.2 440,073 - AZOBR_RS24070 0.73 -0.9 440,073 - AZOBR_RS24070 0.73 -3.8 440,073 - AZOBR_RS24070 0.73 -4.5 440,073 - AZOBR_RS24070 0.73 +0.4 440,372 + +0.2 440,706 + AZOBR_RS24075 0.44 +0.7 440,707 - AZOBR_RS24075 0.44 -3.0 440,707 - AZOBR_RS24075 0.44 -1.4 440,793 + AZOBR_RS24075 0.68 -2.2 440,941 + +1.7 440,941 + -0.8
Or see this region's nucleotide sequence