Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS23515 and AZOBR_RS23520 are separated by 31 nucleotides AZOBR_RS23520 and AZOBR_RS23525 are separated by 4 nucleotides AZOBR_RS23525 and AZOBR_RS23530 are separated by 13 nucleotides
AZOBR_RS23515: AZOBR_RS23515 - ABC transporter permease, at 305,137 to 305,799
_RS23515
AZOBR_RS23520: AZOBR_RS23520 - ABC transporter permease, at 305,831 to 306,493
_RS23520
AZOBR_RS23525: AZOBR_RS23525 - ABC transporter ATP-binding protein, at 306,498 to 307,307
_RS23525
AZOBR_RS23530: AZOBR_RS23530 - putative Major facilitator family transporter, at 307,321 to 308,514
_RS23530
Position (kb) 305
306
307 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 304.851 kb on + strand at 305.335 kb on + strand, within AZOBR_RS23515 at 305.335 kb on + strand, within AZOBR_RS23515 at 305.335 kb on + strand, within AZOBR_RS23515 at 305.335 kb on + strand, within AZOBR_RS23515 at 305.335 kb on + strand, within AZOBR_RS23515 at 305.335 kb on + strand, within AZOBR_RS23515 at 305.335 kb on + strand, within AZOBR_RS23515 at 305.335 kb on + strand, within AZOBR_RS23515 at 305.335 kb on + strand, within AZOBR_RS23515 at 305.335 kb on + strand, within AZOBR_RS23515 at 305.335 kb on + strand, within AZOBR_RS23515 at 305.336 kb on - strand, within AZOBR_RS23515 at 305.336 kb on - strand, within AZOBR_RS23515 at 305.336 kb on - strand, within AZOBR_RS23515 at 305.336 kb on - strand, within AZOBR_RS23515 at 305.336 kb on - strand, within AZOBR_RS23515 at 305.336 kb on - strand, within AZOBR_RS23515 at 305.336 kb on - strand, within AZOBR_RS23515 at 305.336 kb on - strand, within AZOBR_RS23515 at 305.336 kb on - strand, within AZOBR_RS23515 at 305.380 kb on + strand, within AZOBR_RS23515 at 305.380 kb on + strand, within AZOBR_RS23515 at 305.380 kb on + strand, within AZOBR_RS23515 at 305.380 kb on + strand, within AZOBR_RS23515 at 305.381 kb on - strand, within AZOBR_RS23515 at 305.381 kb on - strand, within AZOBR_RS23515 at 305.381 kb on - strand, within AZOBR_RS23515 at 305.381 kb on - strand, within AZOBR_RS23515 at 305.381 kb on - strand, within AZOBR_RS23515 at 305.383 kb on + strand, within AZOBR_RS23515 at 305.384 kb on - strand, within AZOBR_RS23515 at 305.618 kb on - strand, within AZOBR_RS23515 at 305.618 kb on - strand, within AZOBR_RS23515 at 305.987 kb on + strand, within AZOBR_RS23520 at 305.987 kb on + strand, within AZOBR_RS23520 at 305.988 kb on - strand, within AZOBR_RS23520 at 305.988 kb on - strand, within AZOBR_RS23520 at 305.988 kb on - strand, within AZOBR_RS23520 at 306.006 kb on - strand, within AZOBR_RS23520 at 306.125 kb on + strand, within AZOBR_RS23520 at 306.125 kb on + strand, within AZOBR_RS23520 at 306.125 kb on + strand, within AZOBR_RS23520 at 306.125 kb on + strand, within AZOBR_RS23520 at 306.126 kb on - strand, within AZOBR_RS23520 at 306.126 kb on - strand, within AZOBR_RS23520 at 306.126 kb on - strand, within AZOBR_RS23520 at 306.137 kb on + strand, within AZOBR_RS23520 at 306.137 kb on + strand, within AZOBR_RS23520 at 306.137 kb on + strand, within AZOBR_RS23520 at 306.137 kb on + strand, within AZOBR_RS23520 at 306.138 kb on - strand, within AZOBR_RS23520 at 306.219 kb on - strand, within AZOBR_RS23520 at 306.398 kb on + strand, within AZOBR_RS23520 at 306.399 kb on - strand, within AZOBR_RS23520 at 306.419 kb on + strand, within AZOBR_RS23520 at 306.419 kb on + strand, within AZOBR_RS23520 at 306.419 kb on + strand, within AZOBR_RS23520 at 306.420 kb on - strand, within AZOBR_RS23520 at 306.420 kb on - strand, within AZOBR_RS23520 at 306.420 kb on - strand, within AZOBR_RS23520 at 306.420 kb on - strand, within AZOBR_RS23520 at 306.492 kb on - strand at 306.519 kb on + strand at 306.520 kb on - strand at 306.909 kb on + strand, within AZOBR_RS23525 at 307.489 kb on + strand, within AZOBR_RS23530 at 307.490 kb on - strand, within AZOBR_RS23530
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 304,851 + -0.2 305,335 + AZOBR_RS23515 0.30 +0.3 305,335 + AZOBR_RS23515 0.30 +0.5 305,335 + AZOBR_RS23515 0.30 -0.3 305,335 + AZOBR_RS23515 0.30 -2.8 305,335 + AZOBR_RS23515 0.30 -0.6 305,335 + AZOBR_RS23515 0.30 -2.6 305,335 + AZOBR_RS23515 0.30 +1.5 305,335 + AZOBR_RS23515 0.30 -2.0 305,335 + AZOBR_RS23515 0.30 +1.2 305,335 + AZOBR_RS23515 0.30 +0.1 305,335 + AZOBR_RS23515 0.30 +0.2 305,336 - AZOBR_RS23515 0.30 +0.2 305,336 - AZOBR_RS23515 0.30 -0.6 305,336 - AZOBR_RS23515 0.30 +1.8 305,336 - AZOBR_RS23515 0.30 +0.0 305,336 - AZOBR_RS23515 0.30 -0.9 305,336 - AZOBR_RS23515 0.30 -1.7 305,336 - AZOBR_RS23515 0.30 +0.8 305,336 - AZOBR_RS23515 0.30 +0.1 305,336 - AZOBR_RS23515 0.30 -0.7 305,380 + AZOBR_RS23515 0.37 -0.0 305,380 + AZOBR_RS23515 0.37 +0.6 305,380 + AZOBR_RS23515 0.37 -3.0 305,380 + AZOBR_RS23515 0.37 -3.1 305,381 - AZOBR_RS23515 0.37 -0.7 305,381 - AZOBR_RS23515 0.37 +0.4 305,381 - AZOBR_RS23515 0.37 +1.2 305,381 - AZOBR_RS23515 0.37 -0.2 305,381 - AZOBR_RS23515 0.37 +0.1 305,383 + AZOBR_RS23515 0.37 -2.0 305,384 - AZOBR_RS23515 0.37 -0.0 305,618 - AZOBR_RS23515 0.73 -0.9 305,618 - AZOBR_RS23515 0.73 -0.2 305,987 + AZOBR_RS23520 0.24 +0.2 305,987 + AZOBR_RS23520 0.24 +0.3 305,988 - AZOBR_RS23520 0.24 +1.0 305,988 - AZOBR_RS23520 0.24 -0.5 305,988 - AZOBR_RS23520 0.24 +2.4 306,006 - AZOBR_RS23520 0.26 +0.2 306,125 + AZOBR_RS23520 0.44 -0.1 306,125 + AZOBR_RS23520 0.44 -0.6 306,125 + AZOBR_RS23520 0.44 +0.3 306,125 + AZOBR_RS23520 0.44 -0.8 306,126 - AZOBR_RS23520 0.44 +0.1 306,126 - AZOBR_RS23520 0.44 +0.0 306,126 - AZOBR_RS23520 0.44 +0.4 306,137 + AZOBR_RS23520 0.46 +0.4 306,137 + AZOBR_RS23520 0.46 -3.5 306,137 + AZOBR_RS23520 0.46 +0.2 306,137 + AZOBR_RS23520 0.46 +1.6 306,138 - AZOBR_RS23520 0.46 +0.3 306,219 - AZOBR_RS23520 0.59 -3.5 306,398 + AZOBR_RS23520 0.86 -0.9 306,399 - AZOBR_RS23520 0.86 +0.9 306,419 + AZOBR_RS23520 0.89 +1.6 306,419 + AZOBR_RS23520 0.89 -0.9 306,419 + AZOBR_RS23520 0.89 +0.1 306,420 - AZOBR_RS23520 0.89 +1.0 306,420 - AZOBR_RS23520 0.89 -1.4 306,420 - AZOBR_RS23520 0.89 -1.5 306,420 - AZOBR_RS23520 0.89 +0.2 306,492 - -0.4 306,519 + -0.1 306,520 - +0.2 306,909 + AZOBR_RS23525 0.51 +0.1 307,489 + AZOBR_RS23530 0.14 -2.4 307,490 - AZOBR_RS23530 0.14 -4.8
Or see this region's nucleotide sequence