Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS23515

Experiment: D-Cycloserine 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS23510 and AZOBR_RS23515 are separated by 421 nucleotidesAZOBR_RS23515 and AZOBR_RS23520 are separated by 31 nucleotidesAZOBR_RS23520 and AZOBR_RS23525 are separated by 4 nucleotides AZOBR_RS23510: AZOBR_RS23510 - N-formylglutamate amidohydrolase, at 303,915 to 304,715 _RS23510 AZOBR_RS23515: AZOBR_RS23515 - ABC transporter permease, at 305,137 to 305,799 _RS23515 AZOBR_RS23520: AZOBR_RS23520 - ABC transporter permease, at 305,831 to 306,493 _RS23520 AZOBR_RS23525: AZOBR_RS23525 - ABC transporter ATP-binding protein, at 306,498 to 307,307 _RS23525 Position (kb) 305 306Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 304.414 kb on + strand, within AZOBR_RS23510at 304.414 kb on + strand, within AZOBR_RS23510at 304.472 kb on - strand, within AZOBR_RS23510at 304.513 kb on + strand, within AZOBR_RS23510at 304.513 kb on + strand, within AZOBR_RS23510at 304.514 kb on - strand, within AZOBR_RS23510at 304.567 kb on + strand, within AZOBR_RS23510at 304.567 kb on + strand, within AZOBR_RS23510at 304.568 kb on - strand, within AZOBR_RS23510at 304.802 kb on + strandat 304.803 kb on - strandat 304.803 kb on - strandat 304.851 kb on + strandat 305.335 kb on + strand, within AZOBR_RS23515at 305.335 kb on + strand, within AZOBR_RS23515at 305.335 kb on + strand, within AZOBR_RS23515at 305.335 kb on + strand, within AZOBR_RS23515at 305.335 kb on + strand, within AZOBR_RS23515at 305.335 kb on + strand, within AZOBR_RS23515at 305.335 kb on + strand, within AZOBR_RS23515at 305.335 kb on + strand, within AZOBR_RS23515at 305.335 kb on + strand, within AZOBR_RS23515at 305.335 kb on + strand, within AZOBR_RS23515at 305.335 kb on + strand, within AZOBR_RS23515at 305.336 kb on - strand, within AZOBR_RS23515at 305.336 kb on - strand, within AZOBR_RS23515at 305.336 kb on - strand, within AZOBR_RS23515at 305.336 kb on - strand, within AZOBR_RS23515at 305.336 kb on - strand, within AZOBR_RS23515at 305.336 kb on - strand, within AZOBR_RS23515at 305.336 kb on - strand, within AZOBR_RS23515at 305.336 kb on - strand, within AZOBR_RS23515at 305.336 kb on - strand, within AZOBR_RS23515at 305.380 kb on + strand, within AZOBR_RS23515at 305.380 kb on + strand, within AZOBR_RS23515at 305.380 kb on + strand, within AZOBR_RS23515at 305.380 kb on + strand, within AZOBR_RS23515at 305.381 kb on - strand, within AZOBR_RS23515at 305.381 kb on - strand, within AZOBR_RS23515at 305.381 kb on - strand, within AZOBR_RS23515at 305.381 kb on - strand, within AZOBR_RS23515at 305.381 kb on - strand, within AZOBR_RS23515at 305.383 kb on + strand, within AZOBR_RS23515at 305.384 kb on - strand, within AZOBR_RS23515at 305.618 kb on - strand, within AZOBR_RS23515at 305.618 kb on - strand, within AZOBR_RS23515at 305.987 kb on + strand, within AZOBR_RS23520at 305.987 kb on + strand, within AZOBR_RS23520at 305.988 kb on - strand, within AZOBR_RS23520at 305.988 kb on - strand, within AZOBR_RS23520at 305.988 kb on - strand, within AZOBR_RS23520at 306.006 kb on - strand, within AZOBR_RS23520at 306.125 kb on + strand, within AZOBR_RS23520at 306.125 kb on + strand, within AZOBR_RS23520at 306.125 kb on + strand, within AZOBR_RS23520at 306.125 kb on + strand, within AZOBR_RS23520at 306.126 kb on - strand, within AZOBR_RS23520at 306.126 kb on - strand, within AZOBR_RS23520at 306.126 kb on - strand, within AZOBR_RS23520at 306.137 kb on + strand, within AZOBR_RS23520at 306.137 kb on + strand, within AZOBR_RS23520at 306.137 kb on + strand, within AZOBR_RS23520at 306.137 kb on + strand, within AZOBR_RS23520at 306.138 kb on - strand, within AZOBR_RS23520at 306.219 kb on - strand, within AZOBR_RS23520at 306.398 kb on + strand, within AZOBR_RS23520at 306.399 kb on - strand, within AZOBR_RS23520at 306.419 kb on + strand, within AZOBR_RS23520at 306.419 kb on + strand, within AZOBR_RS23520at 306.419 kb on + strand, within AZOBR_RS23520at 306.420 kb on - strand, within AZOBR_RS23520at 306.420 kb on - strand, within AZOBR_RS23520at 306.420 kb on - strand, within AZOBR_RS23520at 306.420 kb on - strand, within AZOBR_RS23520at 306.492 kb on - strandat 306.519 kb on + strandat 306.520 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml
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304,414 + AZOBR_RS23510 0.62 -2.0
304,414 + AZOBR_RS23510 0.62 -4.8
304,472 - AZOBR_RS23510 0.70 -0.6
304,513 + AZOBR_RS23510 0.75 -2.4
304,513 + AZOBR_RS23510 0.75 -2.2
304,514 - AZOBR_RS23510 0.75 -3.6
304,567 + AZOBR_RS23510 0.81 -0.4
304,567 + AZOBR_RS23510 0.81 -3.8
304,568 - AZOBR_RS23510 0.82 +1.5
304,802 + -4.0
304,803 - -3.2
304,803 - -2.8
304,851 + -0.2
305,335 + AZOBR_RS23515 0.30 +0.3
305,335 + AZOBR_RS23515 0.30 +0.5
305,335 + AZOBR_RS23515 0.30 -0.3
305,335 + AZOBR_RS23515 0.30 -2.8
305,335 + AZOBR_RS23515 0.30 -0.6
305,335 + AZOBR_RS23515 0.30 -2.6
305,335 + AZOBR_RS23515 0.30 +1.5
305,335 + AZOBR_RS23515 0.30 -2.0
305,335 + AZOBR_RS23515 0.30 +1.2
305,335 + AZOBR_RS23515 0.30 +0.1
305,335 + AZOBR_RS23515 0.30 +0.2
305,336 - AZOBR_RS23515 0.30 +0.2
305,336 - AZOBR_RS23515 0.30 -0.6
305,336 - AZOBR_RS23515 0.30 +1.8
305,336 - AZOBR_RS23515 0.30 +0.0
305,336 - AZOBR_RS23515 0.30 -0.9
305,336 - AZOBR_RS23515 0.30 -1.7
305,336 - AZOBR_RS23515 0.30 +0.8
305,336 - AZOBR_RS23515 0.30 +0.1
305,336 - AZOBR_RS23515 0.30 -0.7
305,380 + AZOBR_RS23515 0.37 -0.0
305,380 + AZOBR_RS23515 0.37 +0.6
305,380 + AZOBR_RS23515 0.37 -3.0
305,380 + AZOBR_RS23515 0.37 -3.1
305,381 - AZOBR_RS23515 0.37 -0.7
305,381 - AZOBR_RS23515 0.37 +0.4
305,381 - AZOBR_RS23515 0.37 +1.2
305,381 - AZOBR_RS23515 0.37 -0.2
305,381 - AZOBR_RS23515 0.37 +0.1
305,383 + AZOBR_RS23515 0.37 -2.0
305,384 - AZOBR_RS23515 0.37 -0.0
305,618 - AZOBR_RS23515 0.73 -0.9
305,618 - AZOBR_RS23515 0.73 -0.2
305,987 + AZOBR_RS23520 0.24 +0.2
305,987 + AZOBR_RS23520 0.24 +0.3
305,988 - AZOBR_RS23520 0.24 +1.0
305,988 - AZOBR_RS23520 0.24 -0.5
305,988 - AZOBR_RS23520 0.24 +2.4
306,006 - AZOBR_RS23520 0.26 +0.2
306,125 + AZOBR_RS23520 0.44 -0.1
306,125 + AZOBR_RS23520 0.44 -0.6
306,125 + AZOBR_RS23520 0.44 +0.3
306,125 + AZOBR_RS23520 0.44 -0.8
306,126 - AZOBR_RS23520 0.44 +0.1
306,126 - AZOBR_RS23520 0.44 +0.0
306,126 - AZOBR_RS23520 0.44 +0.4
306,137 + AZOBR_RS23520 0.46 +0.4
306,137 + AZOBR_RS23520 0.46 -3.5
306,137 + AZOBR_RS23520 0.46 +0.2
306,137 + AZOBR_RS23520 0.46 +1.6
306,138 - AZOBR_RS23520 0.46 +0.3
306,219 - AZOBR_RS23520 0.59 -3.5
306,398 + AZOBR_RS23520 0.86 -0.9
306,399 - AZOBR_RS23520 0.86 +0.9
306,419 + AZOBR_RS23520 0.89 +1.6
306,419 + AZOBR_RS23520 0.89 -0.9
306,419 + AZOBR_RS23520 0.89 +0.1
306,420 - AZOBR_RS23520 0.89 +1.0
306,420 - AZOBR_RS23520 0.89 -1.4
306,420 - AZOBR_RS23520 0.89 -1.5
306,420 - AZOBR_RS23520 0.89 +0.2
306,492 - -0.4
306,519 + -0.1
306,520 - +0.2

Or see this region's nucleotide sequence