Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS21035 and AZOBR_RS21040 are separated by 55 nucleotides AZOBR_RS21040 and AZOBR_RS21045 are separated by 26 nucleotides AZOBR_RS21045 and AZOBR_RS21050 are separated by 3 nucleotides
AZOBR_RS21035: AZOBR_RS21035 - gamma-glutamyltransferase, at 1,478,878 to 1,480,422
_RS21035
AZOBR_RS21040: AZOBR_RS21040 - hypothetical protein, at 1,480,478 to 1,481,515
_RS21040
AZOBR_RS21045: AZOBR_RS21045 - ABC transporter permease, at 1,481,542 to 1,482,315
_RS21045
AZOBR_RS21050: AZOBR_RS21050 - nitrate ABC transporter ATP-binding protein, at 1,482,319 to 1,483,161
_RS21050
Position (kb) 1480
1481
1482 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1479.848 kb on + strand, within AZOBR_RS21035 at 1479.848 kb on + strand, within AZOBR_RS21035 at 1479.849 kb on - strand, within AZOBR_RS21035 at 1480.016 kb on + strand at 1480.017 kb on - strand, within AZOBR_RS21035 at 1480.095 kb on - strand, within AZOBR_RS21035 at 1480.491 kb on + strand at 1480.491 kb on + strand at 1480.672 kb on - strand, within AZOBR_RS21040 at 1480.899 kb on + strand, within AZOBR_RS21040 at 1480.899 kb on + strand, within AZOBR_RS21040 at 1480.900 kb on - strand, within AZOBR_RS21040 at 1481.196 kb on + strand, within AZOBR_RS21040 at 1481.358 kb on + strand, within AZOBR_RS21040 at 1481.615 kb on + strand at 1481.615 kb on + strand at 1481.616 kb on - strand at 1481.616 kb on - strand at 1481.616 kb on - strand at 1481.616 kb on - strand at 1482.038 kb on + strand, within AZOBR_RS21045 at 1482.039 kb on - strand at 1482.039 kb on - strand, within AZOBR_RS21045 at 1482.039 kb on - strand, within AZOBR_RS21045 at 1482.039 kb on - strand, within AZOBR_RS21045 at 1482.039 kb on - strand, within AZOBR_RS21045 at 1482.050 kb on + strand, within AZOBR_RS21045 at 1482.100 kb on - strand, within AZOBR_RS21045 at 1482.308 kb on + strand at 1482.309 kb on - strand at 1482.309 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 1,479,848 + AZOBR_RS21035 0.63 -0.0 1,479,848 + AZOBR_RS21035 0.63 -3.6 1,479,849 - AZOBR_RS21035 0.63 -0.8 1,480,016 + -1.0 1,480,017 - AZOBR_RS21035 0.74 +0.4 1,480,095 - AZOBR_RS21035 0.79 +1.2 1,480,491 + +0.4 1,480,491 + +0.1 1,480,672 - AZOBR_RS21040 0.19 +0.2 1,480,899 + AZOBR_RS21040 0.41 +0.3 1,480,899 + AZOBR_RS21040 0.41 +0.6 1,480,900 - AZOBR_RS21040 0.41 +1.5 1,481,196 + AZOBR_RS21040 0.69 +2.1 1,481,358 + AZOBR_RS21040 0.85 +0.1 1,481,615 + -0.3 1,481,615 + -0.2 1,481,616 - +0.9 1,481,616 - -1.4 1,481,616 - -3.9 1,481,616 - -0.6 1,482,038 + AZOBR_RS21045 0.64 +1.1 1,482,039 - +0.6 1,482,039 - AZOBR_RS21045 0.64 -4.0 1,482,039 - AZOBR_RS21045 0.64 -0.2 1,482,039 - AZOBR_RS21045 0.64 +0.6 1,482,039 - AZOBR_RS21045 0.64 -1.1 1,482,050 + AZOBR_RS21045 0.66 -0.4 1,482,100 - AZOBR_RS21045 0.72 -1.6 1,482,308 + -0.3 1,482,309 - -2.7 1,482,309 - +0.2
Or see this region's nucleotide sequence