Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS21030 and AZOBR_RS21035 are separated by 103 nucleotides AZOBR_RS21035 and AZOBR_RS21040 are separated by 55 nucleotides
AZOBR_RS21030: AZOBR_RS21030 - MFS transporter, at 1,477,563 to 1,478,774
_RS21030
AZOBR_RS21035: AZOBR_RS21035 - gamma-glutamyltransferase, at 1,478,878 to 1,480,422
_RS21035
AZOBR_RS21040: AZOBR_RS21040 - hypothetical protein, at 1,480,478 to 1,481,515
_RS21040
Position (kb)
1478
1479
1480
1481 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1478.244 kb on + strand, within AZOBR_RS21030 at 1478.244 kb on + strand, within AZOBR_RS21030 at 1478.245 kb on - strand, within AZOBR_RS21030 at 1478.245 kb on - strand, within AZOBR_RS21030 at 1478.245 kb on - strand, within AZOBR_RS21030 at 1478.250 kb on + strand, within AZOBR_RS21030 at 1478.250 kb on + strand, within AZOBR_RS21030 at 1478.250 kb on + strand, within AZOBR_RS21030 at 1478.250 kb on + strand, within AZOBR_RS21030 at 1478.251 kb on - strand, within AZOBR_RS21030 at 1478.251 kb on - strand, within AZOBR_RS21030 at 1478.251 kb on - strand, within AZOBR_RS21030 at 1478.251 kb on - strand, within AZOBR_RS21030 at 1479.197 kb on + strand, within AZOBR_RS21035 at 1479.198 kb on - strand, within AZOBR_RS21035 at 1479.248 kb on + strand, within AZOBR_RS21035 at 1479.248 kb on + strand, within AZOBR_RS21035 at 1479.249 kb on - strand, within AZOBR_RS21035 at 1479.249 kb on - strand, within AZOBR_RS21035 at 1479.371 kb on + strand, within AZOBR_RS21035 at 1479.372 kb on - strand, within AZOBR_RS21035 at 1479.372 kb on - strand, within AZOBR_RS21035 at 1479.848 kb on + strand, within AZOBR_RS21035 at 1479.848 kb on + strand, within AZOBR_RS21035 at 1479.849 kb on - strand, within AZOBR_RS21035 at 1480.016 kb on + strand at 1480.017 kb on - strand, within AZOBR_RS21035 at 1480.095 kb on - strand, within AZOBR_RS21035 at 1480.491 kb on + strand at 1480.491 kb on + strand at 1480.672 kb on - strand, within AZOBR_RS21040 at 1480.899 kb on + strand, within AZOBR_RS21040 at 1480.899 kb on + strand, within AZOBR_RS21040 at 1480.900 kb on - strand, within AZOBR_RS21040 at 1481.196 kb on + strand, within AZOBR_RS21040 at 1481.358 kb on + strand, within AZOBR_RS21040
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 1,478,244 + AZOBR_RS21030 0.56 +1.0 1,478,244 + AZOBR_RS21030 0.56 +1.0 1,478,245 - AZOBR_RS21030 0.56 -3.6 1,478,245 - AZOBR_RS21030 0.56 +1.0 1,478,245 - AZOBR_RS21030 0.56 +1.0 1,478,250 + AZOBR_RS21030 0.57 -1.0 1,478,250 + AZOBR_RS21030 0.57 +0.1 1,478,250 + AZOBR_RS21030 0.57 +2.1 1,478,250 + AZOBR_RS21030 0.57 -4.2 1,478,251 - AZOBR_RS21030 0.57 +1.0 1,478,251 - AZOBR_RS21030 0.57 +0.3 1,478,251 - AZOBR_RS21030 0.57 -1.2 1,478,251 - AZOBR_RS21030 0.57 +0.7 1,479,197 + AZOBR_RS21035 0.21 -0.5 1,479,198 - AZOBR_RS21035 0.21 +0.2 1,479,248 + AZOBR_RS21035 0.24 +0.1 1,479,248 + AZOBR_RS21035 0.24 +0.1 1,479,249 - AZOBR_RS21035 0.24 +0.3 1,479,249 - AZOBR_RS21035 0.24 +0.1 1,479,371 + AZOBR_RS21035 0.32 -1.6 1,479,372 - AZOBR_RS21035 0.32 +0.6 1,479,372 - AZOBR_RS21035 0.32 +0.0 1,479,848 + AZOBR_RS21035 0.63 -0.0 1,479,848 + AZOBR_RS21035 0.63 -3.6 1,479,849 - AZOBR_RS21035 0.63 -0.8 1,480,016 + -1.0 1,480,017 - AZOBR_RS21035 0.74 +0.4 1,480,095 - AZOBR_RS21035 0.79 +1.2 1,480,491 + +0.4 1,480,491 + +0.1 1,480,672 - AZOBR_RS21040 0.19 +0.2 1,480,899 + AZOBR_RS21040 0.41 +0.3 1,480,899 + AZOBR_RS21040 0.41 +0.6 1,480,900 - AZOBR_RS21040 0.41 +1.5 1,481,196 + AZOBR_RS21040 0.69 +2.1 1,481,358 + AZOBR_RS21040 0.85 +0.1
Or see this region's nucleotide sequence