Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS20625 and AZOBR_RS20630 are separated by 189 nucleotides AZOBR_RS20630 and AZOBR_RS20635 are separated by 37 nucleotides AZOBR_RS20635 and AZOBR_RS20640 are separated by 265 nucleotides AZOBR_RS20640 and AZOBR_RS20645 overlap by 1 nucleotides
AZOBR_RS20625: AZOBR_RS20625 - Holliday junction resolvase, at 1,388,043 to 1,388,618
_RS20625
AZOBR_RS20630: AZOBR_RS20630 - acetyltransferase, at 1,388,808 to 1,389,293
_RS20630
AZOBR_RS20635: AZOBR_RS20635 - putative methyl-accepting chemotaxis protein, at 1,389,331 to 1,391,007
_RS20635
AZOBR_RS20640: AZOBR_RS20640 - glutamyl-tRNA amidotransferase subunit C, at 1,391,273 to 1,391,560
_RS20640
AZOBR_RS20645: AZOBR_RS20645 - glutamyl-tRNA(Gln) amidotransferase, at 1,391,560 to 1,393,041
_RS20645
Position (kb)
1389
1390
1391
1392 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1388.631 kb on - strand at 1388.721 kb on + strand at 1388.865 kb on + strand, within AZOBR_RS20630 at 1388.865 kb on + strand, within AZOBR_RS20630 at 1388.866 kb on - strand, within AZOBR_RS20630 at 1389.169 kb on - strand, within AZOBR_RS20630 at 1389.169 kb on - strand, within AZOBR_RS20630 at 1390.457 kb on + strand, within AZOBR_RS20635 at 1390.478 kb on + strand, within AZOBR_RS20635 at 1390.479 kb on - strand, within AZOBR_RS20635 at 1390.479 kb on - strand, within AZOBR_RS20635 at 1390.479 kb on - strand, within AZOBR_RS20635 at 1390.532 kb on + strand, within AZOBR_RS20635 at 1390.532 kb on + strand, within AZOBR_RS20635 at 1390.533 kb on - strand, within AZOBR_RS20635 at 1390.533 kb on - strand, within AZOBR_RS20635 at 1390.731 kb on - strand, within AZOBR_RS20635 at 1390.784 kb on + strand, within AZOBR_RS20635 at 1390.817 kb on + strand, within AZOBR_RS20635 at 1390.818 kb on - strand, within AZOBR_RS20635 at 1390.818 kb on - strand, within AZOBR_RS20635 at 1390.818 kb on - strand, within AZOBR_RS20635 at 1390.832 kb on + strand, within AZOBR_RS20635 at 1390.833 kb on - strand, within AZOBR_RS20635 at 1391.063 kb on - strand at 1391.077 kb on - strand at 1391.155 kb on + strand at 1391.156 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 1,388,631 - -1.4 1,388,721 + +0.1 1,388,865 + AZOBR_RS20630 0.12 -0.7 1,388,865 + AZOBR_RS20630 0.12 -0.5 1,388,866 - AZOBR_RS20630 0.12 +1.0 1,389,169 - AZOBR_RS20630 0.74 -2.3 1,389,169 - AZOBR_RS20630 0.74 +0.5 1,390,457 + AZOBR_RS20635 0.67 -2.5 1,390,478 + AZOBR_RS20635 0.68 -2.1 1,390,479 - AZOBR_RS20635 0.68 +1.4 1,390,479 - AZOBR_RS20635 0.68 -1.8 1,390,479 - AZOBR_RS20635 0.68 +0.5 1,390,532 + AZOBR_RS20635 0.72 -1.3 1,390,532 + AZOBR_RS20635 0.72 +1.8 1,390,533 - AZOBR_RS20635 0.72 -0.0 1,390,533 - AZOBR_RS20635 0.72 -0.9 1,390,731 - AZOBR_RS20635 0.83 +0.6 1,390,784 + AZOBR_RS20635 0.87 +0.6 1,390,817 + AZOBR_RS20635 0.89 -1.2 1,390,818 - AZOBR_RS20635 0.89 +0.4 1,390,818 - AZOBR_RS20635 0.89 -1.4 1,390,818 - AZOBR_RS20635 0.89 -1.5 1,390,832 + AZOBR_RS20635 0.90 -0.9 1,390,833 - AZOBR_RS20635 0.90 -0.5 1,391,063 - -0.2 1,391,077 - -4.4 1,391,155 + -0.1 1,391,156 - -2.8
Or see this region's nucleotide sequence