Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS20630

Experiment: D-Cycloserine 0.125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS20620 and AZOBR_RS20625 are separated by 7 nucleotidesAZOBR_RS20625 and AZOBR_RS20630 are separated by 189 nucleotidesAZOBR_RS20630 and AZOBR_RS20635 are separated by 37 nucleotides AZOBR_RS20620: AZOBR_RS20620 - hypothetical protein, at 1,387,106 to 1,388,035 _RS20620 AZOBR_RS20625: AZOBR_RS20625 - Holliday junction resolvase, at 1,388,043 to 1,388,618 _RS20625 AZOBR_RS20630: AZOBR_RS20630 - acetyltransferase, at 1,388,808 to 1,389,293 _RS20630 AZOBR_RS20635: AZOBR_RS20635 - putative methyl-accepting chemotaxis protein, at 1,389,331 to 1,391,007 _RS20635 Position (kb) 1388 1389 1390Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1387.917 kb on + strand, within AZOBR_RS20620at 1387.917 kb on + strand, within AZOBR_RS20620at 1387.917 kb on + strand, within AZOBR_RS20620at 1388.104 kb on + strand, within AZOBR_RS20625at 1388.104 kb on + strand, within AZOBR_RS20625at 1388.631 kb on - strandat 1388.721 kb on + strandat 1388.865 kb on + strand, within AZOBR_RS20630at 1388.865 kb on + strand, within AZOBR_RS20630at 1388.866 kb on - strand, within AZOBR_RS20630at 1389.169 kb on - strand, within AZOBR_RS20630at 1389.169 kb on - strand, within AZOBR_RS20630

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml
remove
1,387,917 + AZOBR_RS20620 0.87 -4.1
1,387,917 + AZOBR_RS20620 0.87 +0.7
1,387,917 + AZOBR_RS20620 0.87 +0.8
1,388,104 + AZOBR_RS20625 0.11 +0.8
1,388,104 + AZOBR_RS20625 0.11 +0.0
1,388,631 - -1.4
1,388,721 + +0.1
1,388,865 + AZOBR_RS20630 0.12 -0.7
1,388,865 + AZOBR_RS20630 0.12 -0.5
1,388,866 - AZOBR_RS20630 0.12 +1.0
1,389,169 - AZOBR_RS20630 0.74 -2.3
1,389,169 - AZOBR_RS20630 0.74 +0.5

Or see this region's nucleotide sequence