Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS20195

Experiment: D-Cycloserine 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS20190 and AZOBR_RS20195 are separated by 539 nucleotidesAZOBR_RS20195 and AZOBR_RS20200 are separated by 147 nucleotides AZOBR_RS20190: AZOBR_RS20190 - transcriptional regulator, at 1,293,501 to 1,294,091 _RS20190 AZOBR_RS20195: AZOBR_RS20195 - aminotransferase, at 1,294,631 to 1,295,740 _RS20195 AZOBR_RS20200: AZOBR_RS20200 - histidine kinase, at 1,295,888 to 1,297,516 _RS20200 Position (kb) 1294 1295 1296Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1293.843 kb on + strand, within AZOBR_RS20190at 1293.844 kb on - strand, within AZOBR_RS20190at 1294.085 kb on + strandat 1294.086 kb on - strandat 1294.937 kb on + strand, within AZOBR_RS20195at 1294.937 kb on + strand, within AZOBR_RS20195at 1294.938 kb on - strand, within AZOBR_RS20195at 1294.938 kb on - strand, within AZOBR_RS20195at 1294.946 kb on + strand, within AZOBR_RS20195at 1294.946 kb on + strand, within AZOBR_RS20195at 1294.947 kb on - strand, within AZOBR_RS20195at 1294.947 kb on - strand, within AZOBR_RS20195at 1295.177 kb on + strand, within AZOBR_RS20195at 1295.178 kb on - strand, within AZOBR_RS20195at 1295.303 kb on + strand, within AZOBR_RS20195at 1295.354 kb on + strand, within AZOBR_RS20195at 1295.354 kb on + strand, within AZOBR_RS20195at 1295.423 kb on + strand, within AZOBR_RS20195at 1295.423 kb on + strand, within AZOBR_RS20195at 1295.522 kb on + strand, within AZOBR_RS20195at 1295.522 kb on + strand, within AZOBR_RS20195at 1295.523 kb on - strand, within AZOBR_RS20195at 1295.803 kb on - strandat 1296.158 kb on + strand, within AZOBR_RS20200at 1296.158 kb on + strand, within AZOBR_RS20200at 1296.159 kb on - strand, within AZOBR_RS20200at 1296.597 kb on - strand, within AZOBR_RS20200at 1296.659 kb on + strand, within AZOBR_RS20200

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml
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1,293,843 + AZOBR_RS20190 0.58 +0.7
1,293,844 - AZOBR_RS20190 0.58 -2.5
1,294,085 + +0.3
1,294,086 - -1.6
1,294,937 + AZOBR_RS20195 0.28 +0.3
1,294,937 + AZOBR_RS20195 0.28 -1.3
1,294,938 - AZOBR_RS20195 0.28 -1.1
1,294,938 - AZOBR_RS20195 0.28 -1.0
1,294,946 + AZOBR_RS20195 0.28 +1.1
1,294,946 + AZOBR_RS20195 0.28 +0.4
1,294,947 - AZOBR_RS20195 0.28 -1.0
1,294,947 - AZOBR_RS20195 0.28 +0.9
1,295,177 + AZOBR_RS20195 0.49 +0.3
1,295,178 - AZOBR_RS20195 0.49 +1.1
1,295,303 + AZOBR_RS20195 0.61 -0.4
1,295,354 + AZOBR_RS20195 0.65 -2.2
1,295,354 + AZOBR_RS20195 0.65 +0.3
1,295,423 + AZOBR_RS20195 0.71 -0.4
1,295,423 + AZOBR_RS20195 0.71 +2.2
1,295,522 + AZOBR_RS20195 0.80 +0.2
1,295,522 + AZOBR_RS20195 0.80 +0.8
1,295,523 - AZOBR_RS20195 0.80 +1.3
1,295,803 - -2.1
1,296,158 + AZOBR_RS20200 0.17 -0.6
1,296,158 + AZOBR_RS20200 0.17 -4.5
1,296,159 - AZOBR_RS20200 0.17 -0.1
1,296,597 - AZOBR_RS20200 0.44 +0.5
1,296,659 + AZOBR_RS20200 0.47 +0.8

Or see this region's nucleotide sequence