Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS18360 and AZOBR_RS18365 are separated by 70 nucleotides AZOBR_RS18365 and AZOBR_RS18370 are separated by 181 nucleotides AZOBR_RS18370 and AZOBR_RS18375 are separated by 316 nucleotides AZOBR_RS18375 and AZOBR_RS18380 are separated by 239 nucleotides
AZOBR_RS18360: AZOBR_RS18360 - hypothetical protein, at 884,998 to 885,576
_RS18360
AZOBR_RS18365: AZOBR_RS18365 - hypothetical protein, at 885,647 to 885,889
_RS18365
AZOBR_RS18370: AZOBR_RS18370 - aspartate decarboxylase, at 886,071 to 886,505
_RS18370
AZOBR_RS18375: AZOBR_RS18375 - chemotaxis protein, at 886,822 to 887,127
_RS18375
AZOBR_RS18380: AZOBR_RS18380 - chemotaxis protein, at 887,367 to 888,833
_RS18380
Position (kb) 886
887 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 885.281 kb on + strand, within AZOBR_RS18360 at 885.347 kb on + strand, within AZOBR_RS18360 at 885.347 kb on + strand, within AZOBR_RS18360 at 885.347 kb on + strand, within AZOBR_RS18360 at 885.348 kb on - strand, within AZOBR_RS18360 at 885.348 kb on - strand, within AZOBR_RS18360 at 885.378 kb on - strand, within AZOBR_RS18360 at 885.378 kb on - strand, within AZOBR_RS18360 at 885.378 kb on - strand, within AZOBR_RS18360 at 885.399 kb on - strand, within AZOBR_RS18360 at 885.837 kb on - strand, within AZOBR_RS18365 at 885.865 kb on - strand at 885.873 kb on - strand at 885.873 kb on - strand at 885.926 kb on + strand at 885.927 kb on - strand at 886.150 kb on + strand, within AZOBR_RS18370 at 886.235 kb on - strand, within AZOBR_RS18370 at 886.327 kb on + strand, within AZOBR_RS18370 at 886.327 kb on + strand, within AZOBR_RS18370 at 886.328 kb on - strand, within AZOBR_RS18370 at 886.328 kb on - strand, within AZOBR_RS18370 at 886.336 kb on + strand, within AZOBR_RS18370 at 886.336 kb on + strand, within AZOBR_RS18370 at 886.336 kb on + strand, within AZOBR_RS18370 at 886.336 kb on + strand, within AZOBR_RS18370 at 886.336 kb on + strand, within AZOBR_RS18370 at 886.336 kb on + strand, within AZOBR_RS18370 at 886.337 kb on - strand, within AZOBR_RS18370 at 886.337 kb on - strand, within AZOBR_RS18370 at 886.337 kb on - strand, within AZOBR_RS18370 at 886.337 kb on - strand, within AZOBR_RS18370 at 886.337 kb on - strand, within AZOBR_RS18370 at 886.337 kb on - strand, within AZOBR_RS18370 at 886.337 kb on - strand, within AZOBR_RS18370 at 886.337 kb on - strand, within AZOBR_RS18370 at 886.337 kb on - strand, within AZOBR_RS18370 at 886.337 kb on - strand, within AZOBR_RS18370 at 886.337 kb on - strand, within AZOBR_RS18370 at 886.337 kb on - strand, within AZOBR_RS18370 at 886.393 kb on + strand, within AZOBR_RS18370 at 886.393 kb on + strand, within AZOBR_RS18370 at 886.393 kb on + strand, within AZOBR_RS18370 at 886.394 kb on - strand, within AZOBR_RS18370 at 886.444 kb on + strand, within AZOBR_RS18370 at 886.444 kb on + strand, within AZOBR_RS18370 at 886.444 kb on + strand, within AZOBR_RS18370 at 886.444 kb on + strand, within AZOBR_RS18370 at 886.445 kb on - strand, within AZOBR_RS18370 at 886.445 kb on - strand, within AZOBR_RS18370 at 886.485 kb on - strand at 886.635 kb on + strand at 886.673 kb on - strand at 886.737 kb on + strand at 886.738 kb on - strand at 886.740 kb on + strand at 886.740 kb on + strand at 886.741 kb on - strand at 886.786 kb on - strand at 886.849 kb on + strand at 886.849 kb on + strand at 886.849 kb on + strand at 886.850 kb on - strand at 887.047 kb on + strand, within AZOBR_RS18375 at 887.048 kb on - strand, within AZOBR_RS18375 at 887.449 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 885,281 + AZOBR_RS18360 0.49 -0.7 885,347 + AZOBR_RS18360 0.60 -1.2 885,347 + AZOBR_RS18360 0.60 -0.2 885,347 + AZOBR_RS18360 0.60 -0.2 885,348 - AZOBR_RS18360 0.60 +0.5 885,348 - AZOBR_RS18360 0.60 -0.0 885,378 - AZOBR_RS18360 0.66 -0.6 885,378 - AZOBR_RS18360 0.66 +0.0 885,378 - AZOBR_RS18360 0.66 -0.2 885,399 - AZOBR_RS18360 0.69 +0.8 885,837 - AZOBR_RS18365 0.78 -2.1 885,865 - +0.9 885,873 - -2.1 885,873 - -1.3 885,926 + -0.4 885,927 - -1.2 886,150 + AZOBR_RS18370 0.18 +0.5 886,235 - AZOBR_RS18370 0.38 -0.4 886,327 + AZOBR_RS18370 0.59 -4.8 886,327 + AZOBR_RS18370 0.59 -3.2 886,328 - AZOBR_RS18370 0.59 +0.0 886,328 - AZOBR_RS18370 0.59 +0.4 886,336 + AZOBR_RS18370 0.61 +0.4 886,336 + AZOBR_RS18370 0.61 -4.3 886,336 + AZOBR_RS18370 0.61 -4.1 886,336 + AZOBR_RS18370 0.61 +0.2 886,336 + AZOBR_RS18370 0.61 -0.3 886,336 + AZOBR_RS18370 0.61 +0.7 886,337 - AZOBR_RS18370 0.61 +0.6 886,337 - AZOBR_RS18370 0.61 -0.3 886,337 - AZOBR_RS18370 0.61 +0.1 886,337 - AZOBR_RS18370 0.61 -0.2 886,337 - AZOBR_RS18370 0.61 +0.3 886,337 - AZOBR_RS18370 0.61 +0.6 886,337 - AZOBR_RS18370 0.61 +0.7 886,337 - AZOBR_RS18370 0.61 -1.7 886,337 - AZOBR_RS18370 0.61 +0.2 886,337 - AZOBR_RS18370 0.61 -0.2 886,337 - AZOBR_RS18370 0.61 +0.2 886,337 - AZOBR_RS18370 0.61 +0.9 886,393 + AZOBR_RS18370 0.74 -3.4 886,393 + AZOBR_RS18370 0.74 -1.2 886,393 + AZOBR_RS18370 0.74 +1.8 886,394 - AZOBR_RS18370 0.74 -1.1 886,444 + AZOBR_RS18370 0.86 +1.0 886,444 + AZOBR_RS18370 0.86 +1.2 886,444 + AZOBR_RS18370 0.86 +0.1 886,444 + AZOBR_RS18370 0.86 -0.6 886,445 - AZOBR_RS18370 0.86 -1.6 886,445 - AZOBR_RS18370 0.86 -0.4 886,485 - +1.3 886,635 + -1.1 886,673 - +2.2 886,737 + -1.6 886,738 - +3.0 886,740 + -2.7 886,740 + +1.0 886,741 - +3.0 886,786 - -2.7 886,849 + +1.7 886,849 + +2.0 886,849 + +3.3 886,850 - +1.7 887,047 + AZOBR_RS18375 0.74 -2.9 887,048 - AZOBR_RS18375 0.74 +3.1 887,449 - +2.6
Or see this region's nucleotide sequence