Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS18190

Experiment: D-Cycloserine 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS18185 and AZOBR_RS18190 are separated by 400 nucleotidesAZOBR_RS18190 and AZOBR_RS18195 overlap by 4 nucleotides AZOBR_RS18185: AZOBR_RS18185 - sugar ABC transporter, at 838,037 to 839,191 _RS18185 AZOBR_RS18190: AZOBR_RS18190 - hypothetical protein, at 839,592 to 840,293 _RS18190 AZOBR_RS18195: AZOBR_RS18195 - hypothetical protein, at 840,290 to 843,593 _RS18195 Position (kb) 839 840 841Strain fitness (log2 ratio) -3 -2 -1 0 1at 838.652 kb on + strand, within AZOBR_RS18185at 838.652 kb on + strand, within AZOBR_RS18185at 838.652 kb on + strand, within AZOBR_RS18185at 838.653 kb on - strand, within AZOBR_RS18185at 838.730 kb on + strand, within AZOBR_RS18185at 838.730 kb on + strand, within AZOBR_RS18185at 838.751 kb on + strand, within AZOBR_RS18185at 838.752 kb on - strand, within AZOBR_RS18185at 838.772 kb on + strand, within AZOBR_RS18185at 838.772 kb on + strand, within AZOBR_RS18185at 838.773 kb on - strand, within AZOBR_RS18185at 838.773 kb on - strand, within AZOBR_RS18185at 839.082 kb on + strandat 839.082 kb on + strandat 839.082 kb on + strandat 839.083 kb on - strandat 839.267 kb on + strandat 839.267 kb on + strandat 839.268 kb on - strandat 839.381 kb on - strandat 839.427 kb on + strandat 839.591 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml
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838,652 + AZOBR_RS18185 0.53 +0.4
838,652 + AZOBR_RS18185 0.53 -0.2
838,652 + AZOBR_RS18185 0.53 -0.2
838,653 - AZOBR_RS18185 0.53 -0.1
838,730 + AZOBR_RS18185 0.60 -0.2
838,730 + AZOBR_RS18185 0.60 -1.5
838,751 + AZOBR_RS18185 0.62 +0.6
838,752 - AZOBR_RS18185 0.62 +0.2
838,772 + AZOBR_RS18185 0.64 -2.5
838,772 + AZOBR_RS18185 0.64 -2.0
838,773 - AZOBR_RS18185 0.64 +0.3
838,773 - AZOBR_RS18185 0.64 +0.2
839,082 + +0.1
839,082 + +0.2
839,082 + -1.2
839,083 - -3.6
839,267 + +0.6
839,267 + +0.4
839,268 - +0.3
839,381 - -2.5
839,427 + -1.8
839,591 + -2.2

Or see this region's nucleotide sequence