Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS17005 and AZOBR_RS17010 overlap by 60 nucleotides AZOBR_RS17010 and AZOBR_RS17015 are separated by 169 nucleotides AZOBR_RS17015 and AZOBR_RS17020 are separated by 9 nucleotides AZOBR_RS17020 and AZOBR_RS17025 are separated by 24 nucleotides
AZOBR_RS17005: AZOBR_RS17005 - radical SAM protein, at 570,770 to 571,897
_RS17005
AZOBR_RS17010: AZOBR_RS17010 - hypothetical protein, at 571,838 to 572,107
_RS17010
AZOBR_RS17015: AZOBR_RS17015 - hypothetical protein, at 572,277 to 572,663
_RS17015
AZOBR_RS17020: AZOBR_RS17020 - hypothetical protein, at 572,673 to 573,068
_RS17020
AZOBR_RS17025: AZOBR_RS17025 - squalene--hopene cyclase, at 573,093 to 575,024
_RS17025
Position (kb) 572
573
574 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 572.432 kb on - strand, within AZOBR_RS17015 at 572.857 kb on + strand, within AZOBR_RS17020 at 572.858 kb on - strand, within AZOBR_RS17020 at 572.873 kb on - strand, within AZOBR_RS17020 at 572.873 kb on - strand, within AZOBR_RS17020 at 572.873 kb on - strand, within AZOBR_RS17020 at 573.157 kb on + strand at 573.158 kb on - strand at 573.166 kb on + strand at 573.167 kb on - strand at 573.244 kb on + strand at 573.244 kb on + strand at 573.244 kb on + strand at 573.502 kb on + strand, within AZOBR_RS17025 at 573.508 kb on + strand, within AZOBR_RS17025 at 573.508 kb on + strand, within AZOBR_RS17025 at 573.508 kb on + strand, within AZOBR_RS17025 at 573.508 kb on + strand, within AZOBR_RS17025 at 573.509 kb on - strand, within AZOBR_RS17025 at 573.877 kb on + strand, within AZOBR_RS17025 at 573.878 kb on - strand, within AZOBR_RS17025
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 572,432 - AZOBR_RS17015 0.40 -3.3 572,857 + AZOBR_RS17020 0.46 +1.0 572,858 - AZOBR_RS17020 0.47 +0.5 572,873 - AZOBR_RS17020 0.51 +1.0 572,873 - AZOBR_RS17020 0.51 +1.0 572,873 - AZOBR_RS17020 0.51 -0.1 573,157 + +0.0 573,158 - +0.7 573,166 + -1.8 573,167 - -0.0 573,244 + -1.8 573,244 + -0.6 573,244 + +0.4 573,502 + AZOBR_RS17025 0.21 -2.3 573,508 + AZOBR_RS17025 0.21 +0.4 573,508 + AZOBR_RS17025 0.21 -1.1 573,508 + AZOBR_RS17025 0.21 -0.4 573,508 + AZOBR_RS17025 0.21 -0.1 573,509 - AZOBR_RS17025 0.22 +0.8 573,877 + AZOBR_RS17025 0.41 +0.5 573,878 - AZOBR_RS17025 0.41 -0.4
Or see this region's nucleotide sequence