Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS16660

Experiment: D-Cycloserine 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS16655 and AZOBR_RS16660 are separated by 126 nucleotidesAZOBR_RS16660 and AZOBR_RS16665 are separated by 58 nucleotidesAZOBR_RS16665 and AZOBR_RS16670 overlap by 8 nucleotides AZOBR_RS16655: AZOBR_RS16655 - ABC transporter permease, at 493,633 to 494,520 _RS16655 AZOBR_RS16660: AZOBR_RS16660 - ABC transporter permease, at 494,647 to 495,849 _RS16660 AZOBR_RS16665: AZOBR_RS16665 - histidinol dehydrogenase, at 495,908 to 496,630 _RS16665 AZOBR_RS16670: AZOBR_RS16670 - amino acid ABC transporter ATP-binding protein, at 496,623 to 497,399 _RS16670 Position (kb) 494 495 496Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 493.862 kb on + strand, within AZOBR_RS16655at 493.862 kb on + strand, within AZOBR_RS16655at 493.916 kb on + strand, within AZOBR_RS16655at 493.994 kb on + strand, within AZOBR_RS16655at 493.994 kb on + strand, within AZOBR_RS16655at 494.076 kb on - strand, within AZOBR_RS16655at 494.156 kb on + strand, within AZOBR_RS16655at 494.157 kb on - strand, within AZOBR_RS16655at 494.157 kb on - strand, within AZOBR_RS16655at 494.157 kb on - strand, within AZOBR_RS16655at 494.197 kb on + strand, within AZOBR_RS16655at 494.216 kb on + strand, within AZOBR_RS16655at 494.217 kb on - strand, within AZOBR_RS16655at 494.217 kb on - strand, within AZOBR_RS16655at 494.235 kb on - strand, within AZOBR_RS16655at 494.235 kb on - strand, within AZOBR_RS16655at 494.235 kb on - strand, within AZOBR_RS16655at 494.370 kb on - strand, within AZOBR_RS16655at 494.370 kb on - strand, within AZOBR_RS16655at 494.370 kb on - strand, within AZOBR_RS16655at 494.538 kb on + strandat 494.648 kb on + strandat 494.648 kb on + strandat 494.648 kb on + strandat 494.648 kb on + strandat 494.649 kb on - strandat 494.649 kb on - strandat 494.724 kb on - strandat 494.774 kb on + strand, within AZOBR_RS16660at 494.774 kb on + strand, within AZOBR_RS16660at 494.774 kb on + strand, within AZOBR_RS16660at 494.774 kb on + strand, within AZOBR_RS16660at 494.774 kb on + strand, within AZOBR_RS16660at 494.774 kb on + strand, within AZOBR_RS16660at 494.774 kb on + strand, within AZOBR_RS16660at 494.774 kb on + strand, within AZOBR_RS16660at 494.774 kb on + strand, within AZOBR_RS16660at 494.775 kb on - strand, within AZOBR_RS16660at 494.775 kb on - strand, within AZOBR_RS16660at 494.775 kb on - strand, within AZOBR_RS16660at 494.775 kb on - strand, within AZOBR_RS16660at 494.775 kb on - strand, within AZOBR_RS16660at 494.775 kb on - strand, within AZOBR_RS16660at 494.775 kb on - strand, within AZOBR_RS16660at 494.775 kb on - strand, within AZOBR_RS16660at 494.775 kb on - strand, within AZOBR_RS16660at 494.927 kb on + strand, within AZOBR_RS16660at 494.927 kb on + strand, within AZOBR_RS16660at 495.222 kb on - strand, within AZOBR_RS16660at 495.222 kb on - strand, within AZOBR_RS16660at 495.350 kb on + strand, within AZOBR_RS16660at 495.350 kb on + strand, within AZOBR_RS16660at 495.407 kb on + strand, within AZOBR_RS16660at 495.408 kb on - strand, within AZOBR_RS16660at 495.408 kb on - strand, within AZOBR_RS16660at 495.416 kb on + strand, within AZOBR_RS16660at 495.416 kb on + strand, within AZOBR_RS16660at 495.417 kb on - strand, within AZOBR_RS16660at 495.731 kb on + strandat 495.731 kb on + strandat 495.731 kb on + strandat 495.732 kb on - strandat 495.732 kb on - strandat 495.922 kb on - strandat 495.922 kb on - strandat 495.922 kb on - strandat 495.922 kb on - strandat 495.922 kb on - strandat 495.922 kb on - strandat 495.922 kb on - strandat 495.999 kb on + strand, within AZOBR_RS16665at 495.999 kb on + strand, within AZOBR_RS16665at 496.260 kb on + strand, within AZOBR_RS16665at 496.261 kb on - strand, within AZOBR_RS16665

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml
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493,862 + AZOBR_RS16655 0.26 -0.8
493,862 + AZOBR_RS16655 0.26 +0.4
493,916 + AZOBR_RS16655 0.32 +1.2
493,994 + AZOBR_RS16655 0.41 -0.2
493,994 + AZOBR_RS16655 0.41 -2.6
494,076 - AZOBR_RS16655 0.50 -0.7
494,156 + AZOBR_RS16655 0.59 +0.6
494,157 - AZOBR_RS16655 0.59 -0.9
494,157 - AZOBR_RS16655 0.59 -0.2
494,157 - AZOBR_RS16655 0.59 +0.5
494,197 + AZOBR_RS16655 0.64 -0.7
494,216 + AZOBR_RS16655 0.66 -0.7
494,217 - AZOBR_RS16655 0.66 +0.2
494,217 - AZOBR_RS16655 0.66 -0.1
494,235 - AZOBR_RS16655 0.68 -1.9
494,235 - AZOBR_RS16655 0.68 +0.3
494,235 - AZOBR_RS16655 0.68 -0.1
494,370 - AZOBR_RS16655 0.83 +2.0
494,370 - AZOBR_RS16655 0.83 -4.4
494,370 - AZOBR_RS16655 0.83 +0.2
494,538 + -0.1
494,648 + -1.0
494,648 + -0.8
494,648 + -0.7
494,648 + -0.4
494,649 - +1.1
494,649 - +0.8
494,724 - +0.5
494,774 + AZOBR_RS16660 0.11 -0.0
494,774 + AZOBR_RS16660 0.11 +0.0
494,774 + AZOBR_RS16660 0.11 -1.1
494,774 + AZOBR_RS16660 0.11 +0.6
494,774 + AZOBR_RS16660 0.11 -4.9
494,774 + AZOBR_RS16660 0.11 -0.2
494,774 + AZOBR_RS16660 0.11 -1.1
494,774 + AZOBR_RS16660 0.11 -0.8
494,774 + AZOBR_RS16660 0.11 +0.4
494,775 - AZOBR_RS16660 0.11 -0.3
494,775 - AZOBR_RS16660 0.11 -0.0
494,775 - AZOBR_RS16660 0.11 +1.2
494,775 - AZOBR_RS16660 0.11 -3.5
494,775 - AZOBR_RS16660 0.11 +0.7
494,775 - AZOBR_RS16660 0.11 +1.5
494,775 - AZOBR_RS16660 0.11 -2.0
494,775 - AZOBR_RS16660 0.11 -2.5
494,775 - AZOBR_RS16660 0.11 -0.8
494,927 + AZOBR_RS16660 0.23 +0.9
494,927 + AZOBR_RS16660 0.23 -0.4
495,222 - AZOBR_RS16660 0.48 -0.8
495,222 - AZOBR_RS16660 0.48 -0.5
495,350 + AZOBR_RS16660 0.58 -0.4
495,350 + AZOBR_RS16660 0.58 -4.4
495,407 + AZOBR_RS16660 0.63 -1.2
495,408 - AZOBR_RS16660 0.63 -0.1
495,408 - AZOBR_RS16660 0.63 -0.5
495,416 + AZOBR_RS16660 0.64 -0.2
495,416 + AZOBR_RS16660 0.64 -0.3
495,417 - AZOBR_RS16660 0.64 +0.5
495,731 + +0.6
495,731 + -3.9
495,731 + -0.5
495,732 - -1.4
495,732 - -0.3
495,922 - +2.4
495,922 - +0.3
495,922 - -4.5
495,922 - -0.5
495,922 - +0.3
495,922 - -2.3
495,922 - +1.0
495,999 + AZOBR_RS16665 0.13 +1.2
495,999 + AZOBR_RS16665 0.13 +0.7
496,260 + AZOBR_RS16665 0.49 +0.2
496,261 - AZOBR_RS16665 0.49 +0.2

Or see this region's nucleotide sequence