Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS16520

Experiment: D-Cycloserine 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS16515 and AZOBR_RS16520 are separated by 130 nucleotidesAZOBR_RS16520 and AZOBR_RS16525 are separated by 210 nucleotides AZOBR_RS16515: AZOBR_RS16515 - S-(hydroxymethyl)glutathione dehydrogenase, at 455,654 to 456,772 _RS16515 AZOBR_RS16520: AZOBR_RS16520 - LysR family transcriptional regulator, at 456,903 to 457,820 _RS16520 AZOBR_RS16525: AZOBR_RS16525 - hypothetical protein, at 458,031 to 458,855 _RS16525 Position (kb) 456 457 458Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 455.995 kb on - strand, within AZOBR_RS16515at 456.048 kb on + strand, within AZOBR_RS16515at 456.048 kb on + strand, within AZOBR_RS16515at 456.366 kb on + strand, within AZOBR_RS16515at 456.366 kb on + strand, within AZOBR_RS16515at 456.366 kb on + strand, within AZOBR_RS16515at 456.366 kb on + strand, within AZOBR_RS16515at 456.366 kb on + strand, within AZOBR_RS16515at 456.367 kb on - strand, within AZOBR_RS16515at 456.367 kb on - strand, within AZOBR_RS16515at 456.367 kb on - strand, within AZOBR_RS16515at 456.367 kb on - strand, within AZOBR_RS16515at 456.367 kb on - strand, within AZOBR_RS16515at 456.367 kb on - strand, within AZOBR_RS16515at 456.636 kb on + strand, within AZOBR_RS16515at 456.636 kb on + strand, within AZOBR_RS16515at 456.637 kb on - strand, within AZOBR_RS16515at 456.637 kb on - strand, within AZOBR_RS16515at 456.637 kb on - strand, within AZOBR_RS16515at 456.637 kb on - strand, within AZOBR_RS16515at 457.051 kb on - strand, within AZOBR_RS16520at 457.207 kb on - strand, within AZOBR_RS16520at 457.413 kb on + strand, within AZOBR_RS16520at 457.645 kb on - strand, within AZOBR_RS16520at 457.645 kb on - strand, within AZOBR_RS16520at 457.647 kb on + strand, within AZOBR_RS16520at 457.647 kb on + strand, within AZOBR_RS16520at 457.647 kb on + strand, within AZOBR_RS16520at 457.647 kb on + strand, within AZOBR_RS16520at 457.647 kb on + strand, within AZOBR_RS16520at 457.648 kb on - strand, within AZOBR_RS16520at 457.648 kb on - strand, within AZOBR_RS16520at 457.648 kb on - strand, within AZOBR_RS16520at 457.648 kb on - strand, within AZOBR_RS16520at 457.731 kb on + strandat 457.732 kb on - strandat 458.049 kb on + strandat 458.050 kb on - strandat 458.149 kb on - strand, within AZOBR_RS16525at 458.149 kb on - strand, within AZOBR_RS16525at 458.149 kb on - strand, within AZOBR_RS16525at 458.226 kb on + strand, within AZOBR_RS16525at 458.226 kb on + strand, within AZOBR_RS16525at 458.227 kb on - strand, within AZOBR_RS16525at 458.227 kb on - strand, within AZOBR_RS16525at 458.325 kb on + strand, within AZOBR_RS16525at 458.350 kb on - strand, within AZOBR_RS16525at 458.350 kb on - strand, within AZOBR_RS16525at 458.350 kb on - strand, within AZOBR_RS16525at 458.460 kb on - strand, within AZOBR_RS16525at 458.523 kb on + strand, within AZOBR_RS16525at 458.523 kb on + strand, within AZOBR_RS16525at 458.523 kb on + strand, within AZOBR_RS16525at 458.523 kb on + strand, within AZOBR_RS16525at 458.523 kb on + strand, within AZOBR_RS16525at 458.523 kb on + strand, within AZOBR_RS16525at 458.523 kb on + strand, within AZOBR_RS16525at 458.523 kb on + strand, within AZOBR_RS16525at 458.523 kb on + strand, within AZOBR_RS16525at 458.524 kb on - strand, within AZOBR_RS16525at 458.529 kb on + strand, within AZOBR_RS16525at 458.529 kb on + strand, within AZOBR_RS16525at 458.529 kb on + strand, within AZOBR_RS16525at 458.529 kb on + strand, within AZOBR_RS16525at 458.529 kb on + strand, within AZOBR_RS16525at 458.529 kb on + strand, within AZOBR_RS16525at 458.529 kb on + strand, within AZOBR_RS16525at 458.530 kb on - strand, within AZOBR_RS16525at 458.530 kb on - strand, within AZOBR_RS16525at 458.622 kb on + strand, within AZOBR_RS16525at 458.623 kb on - strand, within AZOBR_RS16525at 458.631 kb on + strand, within AZOBR_RS16525at 458.632 kb on - strand, within AZOBR_RS16525at 458.632 kb on - strand, within AZOBR_RS16525at 458.632 kb on - strand, within AZOBR_RS16525at 458.632 kb on - strand, within AZOBR_RS16525at 458.633 kb on + strand, within AZOBR_RS16525at 458.633 kb on + strand, within AZOBR_RS16525at 458.633 kb on + strand, within AZOBR_RS16525at 458.634 kb on - strand, within AZOBR_RS16525at 458.634 kb on - strand, within AZOBR_RS16525

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml
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455,995 - AZOBR_RS16515 0.30 +1.2
456,048 + AZOBR_RS16515 0.35 +0.2
456,048 + AZOBR_RS16515 0.35 +0.1
456,366 + AZOBR_RS16515 0.64 +0.3
456,366 + AZOBR_RS16515 0.64 -1.2
456,366 + AZOBR_RS16515 0.64 +0.6
456,366 + AZOBR_RS16515 0.64 +0.9
456,366 + AZOBR_RS16515 0.64 -1.0
456,367 - AZOBR_RS16515 0.64 +1.0
456,367 - AZOBR_RS16515 0.64 +1.2
456,367 - AZOBR_RS16515 0.64 -4.0
456,367 - AZOBR_RS16515 0.64 -0.1
456,367 - AZOBR_RS16515 0.64 +0.1
456,367 - AZOBR_RS16515 0.64 +1.2
456,636 + AZOBR_RS16515 0.88 -0.8
456,636 + AZOBR_RS16515 0.88 -3.5
456,637 - AZOBR_RS16515 0.88 +0.7
456,637 - AZOBR_RS16515 0.88 -0.9
456,637 - AZOBR_RS16515 0.88 -0.2
456,637 - AZOBR_RS16515 0.88 -0.5
457,051 - AZOBR_RS16520 0.16 +1.4
457,207 - AZOBR_RS16520 0.33 +0.7
457,413 + AZOBR_RS16520 0.56 +0.1
457,645 - AZOBR_RS16520 0.81 +0.4
457,645 - AZOBR_RS16520 0.81 -0.2
457,647 + AZOBR_RS16520 0.81 +0.4
457,647 + AZOBR_RS16520 0.81 +0.6
457,647 + AZOBR_RS16520 0.81 -2.9
457,647 + AZOBR_RS16520 0.81 -0.3
457,647 + AZOBR_RS16520 0.81 +0.1
457,648 - AZOBR_RS16520 0.81 +0.3
457,648 - AZOBR_RS16520 0.81 +0.4
457,648 - AZOBR_RS16520 0.81 -1.1
457,648 - AZOBR_RS16520 0.81 -0.7
457,731 + -0.2
457,732 - +0.8
458,049 + +0.3
458,050 - +1.3
458,149 - AZOBR_RS16525 0.14 +0.0
458,149 - AZOBR_RS16525 0.14 -0.4
458,149 - AZOBR_RS16525 0.14 +0.4
458,226 + AZOBR_RS16525 0.24 -2.8
458,226 + AZOBR_RS16525 0.24 +0.4
458,227 - AZOBR_RS16525 0.24 +1.3
458,227 - AZOBR_RS16525 0.24 +2.6
458,325 + AZOBR_RS16525 0.36 -2.4
458,350 - AZOBR_RS16525 0.39 +0.3
458,350 - AZOBR_RS16525 0.39 -2.4
458,350 - AZOBR_RS16525 0.39 -0.2
458,460 - AZOBR_RS16525 0.52 +0.1
458,523 + AZOBR_RS16525 0.60 -0.2
458,523 + AZOBR_RS16525 0.60 -0.6
458,523 + AZOBR_RS16525 0.60 -3.9
458,523 + AZOBR_RS16525 0.60 -3.8
458,523 + AZOBR_RS16525 0.60 +0.3
458,523 + AZOBR_RS16525 0.60 -0.3
458,523 + AZOBR_RS16525 0.60 -0.5
458,523 + AZOBR_RS16525 0.60 -3.6
458,523 + AZOBR_RS16525 0.60 +1.2
458,524 - AZOBR_RS16525 0.60 -0.2
458,529 + AZOBR_RS16525 0.60 -3.3
458,529 + AZOBR_RS16525 0.60 +1.1
458,529 + AZOBR_RS16525 0.60 -0.6
458,529 + AZOBR_RS16525 0.60 -0.2
458,529 + AZOBR_RS16525 0.60 -0.6
458,529 + AZOBR_RS16525 0.60 -0.2
458,529 + AZOBR_RS16525 0.60 -2.9
458,530 - AZOBR_RS16525 0.60 +0.7
458,530 - AZOBR_RS16525 0.60 -3.1
458,622 + AZOBR_RS16525 0.72 -0.7
458,623 - AZOBR_RS16525 0.72 -0.9
458,631 + AZOBR_RS16525 0.73 -2.6
458,632 - AZOBR_RS16525 0.73 -0.6
458,632 - AZOBR_RS16525 0.73 -1.2
458,632 - AZOBR_RS16525 0.73 +0.6
458,632 - AZOBR_RS16525 0.73 +0.7
458,633 + AZOBR_RS16525 0.73 +0.2
458,633 + AZOBR_RS16525 0.73 +0.7
458,633 + AZOBR_RS16525 0.73 +0.4
458,634 - AZOBR_RS16525 0.73 +0.3
458,634 - AZOBR_RS16525 0.73 -0.5

Or see this region's nucleotide sequence