Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS16495 and AZOBR_RS16500 are separated by 34 nucleotides AZOBR_RS16500 and AZOBR_RS16505 are separated by 290 nucleotides
AZOBR_RS16495: AZOBR_RS16495 - hypothetical protein, at 450,301 to 451,314
_RS16495
AZOBR_RS16500: AZOBR_RS16500 - C4-dicarboxylate ABC transporter permease, at 451,349 to 453,370
_RS16500
AZOBR_RS16505: AZOBR_RS16505 - hypothetical protein, at 453,661 to 454,647
_RS16505
Position (kb) 451
452
453
454 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 450.431 kb on + strand, within AZOBR_RS16495 at 450.432 kb on - strand, within AZOBR_RS16495 at 450.644 kb on + strand, within AZOBR_RS16495 at 450.645 kb on - strand, within AZOBR_RS16495 at 450.852 kb on - strand at 451.350 kb on + strand at 451.434 kb on + strand at 451.435 kb on - strand at 451.435 kb on - strand at 451.722 kb on + strand, within AZOBR_RS16500 at 451.767 kb on + strand, within AZOBR_RS16500 at 451.770 kb on + strand, within AZOBR_RS16500 at 451.770 kb on + strand, within AZOBR_RS16500 at 451.770 kb on - strand, within AZOBR_RS16500 at 451.851 kb on + strand, within AZOBR_RS16500 at 451.851 kb on + strand, within AZOBR_RS16500 at 451.851 kb on + strand, within AZOBR_RS16500 at 451.851 kb on + strand, within AZOBR_RS16500 at 451.851 kb on + strand, within AZOBR_RS16500 at 452.010 kb on + strand, within AZOBR_RS16500 at 452.011 kb on - strand, within AZOBR_RS16500 at 452.097 kb on + strand, within AZOBR_RS16500 at 452.098 kb on - strand, within AZOBR_RS16500 at 452.208 kb on + strand, within AZOBR_RS16500 at 452.208 kb on + strand, within AZOBR_RS16500 at 452.209 kb on - strand, within AZOBR_RS16500 at 452.209 kb on - strand, within AZOBR_RS16500 at 452.418 kb on + strand, within AZOBR_RS16500 at 452.419 kb on - strand, within AZOBR_RS16500 at 452.419 kb on - strand, within AZOBR_RS16500 at 452.419 kb on - strand, within AZOBR_RS16500 at 452.532 kb on + strand, within AZOBR_RS16500 at 452.533 kb on - strand, within AZOBR_RS16500 at 452.751 kb on + strand, within AZOBR_RS16500 at 452.751 kb on + strand, within AZOBR_RS16500 at 452.751 kb on + strand, within AZOBR_RS16500 at 452.752 kb on - strand, within AZOBR_RS16500 at 452.752 kb on - strand, within AZOBR_RS16500 at 452.752 kb on - strand, within AZOBR_RS16500 at 452.802 kb on + strand, within AZOBR_RS16500 at 452.802 kb on + strand, within AZOBR_RS16500 at 452.803 kb on - strand, within AZOBR_RS16500 at 452.803 kb on - strand, within AZOBR_RS16500 at 452.803 kb on - strand, within AZOBR_RS16500 at 452.803 kb on - strand, within AZOBR_RS16500 at 452.880 kb on + strand, within AZOBR_RS16500 at 452.880 kb on + strand, within AZOBR_RS16500 at 453.237 kb on + strand at 453.238 kb on - strand at 453.238 kb on - strand at 453.617 kb on - strand at 453.617 kb on - strand at 453.617 kb on - strand at 453.686 kb on + strand at 453.687 kb on - strand at 453.803 kb on + strand, within AZOBR_RS16505 at 453.824 kb on + strand, within AZOBR_RS16505 at 453.824 kb on + strand, within AZOBR_RS16505 at 453.825 kb on - strand, within AZOBR_RS16505 at 453.905 kb on + strand, within AZOBR_RS16505 at 453.905 kb on + strand, within AZOBR_RS16505 at 453.906 kb on - strand, within AZOBR_RS16505 at 453.906 kb on - strand, within AZOBR_RS16505 at 453.906 kb on - strand, within AZOBR_RS16505 at 454.055 kb on + strand, within AZOBR_RS16505 at 454.055 kb on + strand, within AZOBR_RS16505 at 454.056 kb on - strand, within AZOBR_RS16505 at 454.109 kb on + strand, within AZOBR_RS16505 at 454.109 kb on + strand, within AZOBR_RS16505
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 450,431 + AZOBR_RS16495 0.13 +0.9 450,432 - AZOBR_RS16495 0.13 +0.2 450,644 + AZOBR_RS16495 0.34 -0.0 450,645 - AZOBR_RS16495 0.34 -0.4 450,852 - +1.9 451,350 + -1.4 451,434 + -0.1 451,435 - -3.4 451,435 - -0.9 451,722 + AZOBR_RS16500 0.18 -0.7 451,767 + AZOBR_RS16500 0.21 -0.2 451,770 + AZOBR_RS16500 0.21 -2.2 451,770 + AZOBR_RS16500 0.21 -1.3 451,770 - AZOBR_RS16500 0.21 -0.6 451,851 + AZOBR_RS16500 0.25 +0.3 451,851 + AZOBR_RS16500 0.25 -3.9 451,851 + AZOBR_RS16500 0.25 -3.2 451,851 + AZOBR_RS16500 0.25 -2.7 451,851 + AZOBR_RS16500 0.25 -2.9 452,010 + AZOBR_RS16500 0.33 +0.7 452,011 - AZOBR_RS16500 0.33 -1.6 452,097 + AZOBR_RS16500 0.37 -4.2 452,098 - AZOBR_RS16500 0.37 +1.5 452,208 + AZOBR_RS16500 0.42 +0.7 452,208 + AZOBR_RS16500 0.42 -1.2 452,209 - AZOBR_RS16500 0.43 -0.8 452,209 - AZOBR_RS16500 0.43 +0.1 452,418 + AZOBR_RS16500 0.53 +0.5 452,419 - AZOBR_RS16500 0.53 -1.0 452,419 - AZOBR_RS16500 0.53 +0.7 452,419 - AZOBR_RS16500 0.53 +0.9 452,532 + AZOBR_RS16500 0.59 -0.5 452,533 - AZOBR_RS16500 0.59 +1.0 452,751 + AZOBR_RS16500 0.69 -3.6 452,751 + AZOBR_RS16500 0.69 -0.3 452,751 + AZOBR_RS16500 0.69 -2.4 452,752 - AZOBR_RS16500 0.69 -1.9 452,752 - AZOBR_RS16500 0.69 +0.2 452,752 - AZOBR_RS16500 0.69 +0.6 452,802 + AZOBR_RS16500 0.72 +0.8 452,802 + AZOBR_RS16500 0.72 -1.8 452,803 - AZOBR_RS16500 0.72 -1.2 452,803 - AZOBR_RS16500 0.72 +0.5 452,803 - AZOBR_RS16500 0.72 -0.3 452,803 - AZOBR_RS16500 0.72 +0.3 452,880 + AZOBR_RS16500 0.76 -1.6 452,880 + AZOBR_RS16500 0.76 +0.8 453,237 + +0.4 453,238 - -0.5 453,238 - -0.0 453,617 - +0.7 453,617 - +0.0 453,617 - -0.7 453,686 + +1.2 453,687 - -1.1 453,803 + AZOBR_RS16505 0.14 -1.5 453,824 + AZOBR_RS16505 0.17 -0.3 453,824 + AZOBR_RS16505 0.17 +0.5 453,825 - AZOBR_RS16505 0.17 -0.5 453,905 + AZOBR_RS16505 0.25 +1.7 453,905 + AZOBR_RS16505 0.25 -1.0 453,906 - AZOBR_RS16505 0.25 +0.0 453,906 - AZOBR_RS16505 0.25 +0.3 453,906 - AZOBR_RS16505 0.25 -1.8 454,055 + AZOBR_RS16505 0.40 -1.1 454,055 + AZOBR_RS16505 0.40 -0.9 454,056 - AZOBR_RS16505 0.40 +3.1 454,109 + AZOBR_RS16505 0.45 -2.5 454,109 + AZOBR_RS16505 0.45 -0.7
Or see this region's nucleotide sequence