Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS14865

Experiment: D-Cycloserine 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS14865 and AZOBR_RS14870 are separated by 85 nucleotidesAZOBR_RS14870 and AZOBR_RS14875 are separated by 129 nucleotides AZOBR_RS14865: AZOBR_RS14865 - aminopeptidase N, at 107,728 to 110,385 _RS14865 AZOBR_RS14870: AZOBR_RS14870 - cytochrome C transmembrane protein, at 110,471 to 110,851 _RS14870 AZOBR_RS14875: AZOBR_RS14875 - carbon monoxide dehydrogenase subunit G, at 110,981 to 111,643 _RS14875 Position (kb) 107 108 109 110 111Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 106.830 kb on - strandat 106.972 kb on + strandat 106.973 kb on - strandat 106.976 kb on + strandat 106.976 kb on + strandat 107.114 kb on - strandat 107.116 kb on - strandat 107.173 kb on - strandat 107.183 kb on + strandat 107.275 kb on + strandat 107.307 kb on + strandat 107.421 kb on - strandat 107.523 kb on + strandat 107.674 kb on - strandat 107.674 kb on - strandat 107.968 kb on + strandat 107.969 kb on - strandat 108.076 kb on + strand, within AZOBR_RS14865at 108.076 kb on + strand, within AZOBR_RS14865at 108.076 kb on + strand, within AZOBR_RS14865at 108.076 kb on + strand, within AZOBR_RS14865at 108.076 kb on + strand, within AZOBR_RS14865at 108.076 kb on + strand, within AZOBR_RS14865at 108.076 kb on + strand, within AZOBR_RS14865at 108.077 kb on - strand, within AZOBR_RS14865at 108.077 kb on - strand, within AZOBR_RS14865at 108.137 kb on - strand, within AZOBR_RS14865at 108.137 kb on - strand, within AZOBR_RS14865at 108.137 kb on - strand, within AZOBR_RS14865at 108.137 kb on - strand, within AZOBR_RS14865at 108.301 kb on + strand, within AZOBR_RS14865at 108.301 kb on + strand, within AZOBR_RS14865at 108.301 kb on + strand, within AZOBR_RS14865at 108.302 kb on - strand, within AZOBR_RS14865at 108.302 kb on - strand, within AZOBR_RS14865at 108.302 kb on - strand, within AZOBR_RS14865at 108.302 kb on - strand, within AZOBR_RS14865at 108.388 kb on + strand, within AZOBR_RS14865at 108.388 kb on + strand, within AZOBR_RS14865at 108.388 kb on + strand, within AZOBR_RS14865at 108.388 kb on + strand, within AZOBR_RS14865at 108.388 kb on + strand, within AZOBR_RS14865at 108.388 kb on + strand, within AZOBR_RS14865at 108.389 kb on - strand, within AZOBR_RS14865at 108.389 kb on - strand, within AZOBR_RS14865at 108.572 kb on - strand, within AZOBR_RS14865at 108.572 kb on - strand, within AZOBR_RS14865at 108.572 kb on - strand, within AZOBR_RS14865at 108.572 kb on - strand, within AZOBR_RS14865at 108.643 kb on + strand, within AZOBR_RS14865at 108.643 kb on + strand, within AZOBR_RS14865at 108.853 kb on + strand, within AZOBR_RS14865at 108.853 kb on + strand, within AZOBR_RS14865at 108.853 kb on + strand, within AZOBR_RS14865at 108.853 kb on + strand, within AZOBR_RS14865at 108.853 kb on + strand, within AZOBR_RS14865at 108.853 kb on + strand, within AZOBR_RS14865at 108.854 kb on - strand, within AZOBR_RS14865at 108.854 kb on - strand, within AZOBR_RS14865at 108.854 kb on - strand, within AZOBR_RS14865at 108.854 kb on - strand, within AZOBR_RS14865at 108.854 kb on - strand, within AZOBR_RS14865at 108.874 kb on + strand, within AZOBR_RS14865at 108.875 kb on - strand, within AZOBR_RS14865at 108.889 kb on + strand, within AZOBR_RS14865at 108.889 kb on + strand, within AZOBR_RS14865at 108.889 kb on + strand, within AZOBR_RS14865at 108.920 kb on - strand, within AZOBR_RS14865at 108.920 kb on - strand, within AZOBR_RS14865at 108.920 kb on - strand, within AZOBR_RS14865at 108.967 kb on + strand, within AZOBR_RS14865at 108.968 kb on - strand, within AZOBR_RS14865at 109.631 kb on - strand, within AZOBR_RS14865at 109.874 kb on - strand, within AZOBR_RS14865at 109.874 kb on - strand, within AZOBR_RS14865at 109.969 kb on + strand, within AZOBR_RS14865at 109.969 kb on + strand, within AZOBR_RS14865at 110.111 kb on - strand, within AZOBR_RS14865at 110.111 kb on - strand, within AZOBR_RS14865at 110.580 kb on + strand, within AZOBR_RS14870at 110.580 kb on + strand, within AZOBR_RS14870at 110.581 kb on - strand, within AZOBR_RS14870at 110.840 kb on - strandat 110.840 kb on - strandat 110.840 kb on - strandat 110.914 kb on + strandat 110.914 kb on + strandat 110.914 kb on + strandat 110.914 kb on + strandat 110.915 kb on - strandat 110.915 kb on - strandat 110.915 kb on - strandat 110.929 kb on + strandat 110.930 kb on - strandat 111.045 kb on + strandat 111.045 kb on + strandat 111.046 kb on - strandat 111.046 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml
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106,830 - -1.5
106,972 + -1.1
106,973 - +1.3
106,976 + -4.1
106,976 + -0.4
107,114 - -1.5
107,116 - -3.4
107,173 - -0.3
107,183 + -1.0
107,275 + -0.2
107,307 + -1.6
107,421 - +0.3
107,523 + +0.1
107,674 - +0.3
107,674 - -0.8
107,968 + -1.8
107,969 - -0.4
108,076 + AZOBR_RS14865 0.13 -2.1
108,076 + AZOBR_RS14865 0.13 +0.5
108,076 + AZOBR_RS14865 0.13 -0.2
108,076 + AZOBR_RS14865 0.13 -0.4
108,076 + AZOBR_RS14865 0.13 +0.3
108,076 + AZOBR_RS14865 0.13 +0.9
108,076 + AZOBR_RS14865 0.13 +0.3
108,077 - AZOBR_RS14865 0.13 -1.1
108,077 - AZOBR_RS14865 0.13 +0.3
108,137 - AZOBR_RS14865 0.15 -0.3
108,137 - AZOBR_RS14865 0.15 +0.6
108,137 - AZOBR_RS14865 0.15 -4.8
108,137 - AZOBR_RS14865 0.15 -3.4
108,301 + AZOBR_RS14865 0.22 +1.0
108,301 + AZOBR_RS14865 0.22 +0.7
108,301 + AZOBR_RS14865 0.22 -1.0
108,302 - AZOBR_RS14865 0.22 +0.9
108,302 - AZOBR_RS14865 0.22 +0.4
108,302 - AZOBR_RS14865 0.22 -0.3
108,302 - AZOBR_RS14865 0.22 -4.6
108,388 + AZOBR_RS14865 0.25 -0.9
108,388 + AZOBR_RS14865 0.25 -1.4
108,388 + AZOBR_RS14865 0.25 -0.4
108,388 + AZOBR_RS14865 0.25 -0.1
108,388 + AZOBR_RS14865 0.25 +1.4
108,388 + AZOBR_RS14865 0.25 -0.8
108,389 - AZOBR_RS14865 0.25 +1.1
108,389 - AZOBR_RS14865 0.25 +0.5
108,572 - AZOBR_RS14865 0.32 -0.1
108,572 - AZOBR_RS14865 0.32 -2.1
108,572 - AZOBR_RS14865 0.32 +0.8
108,572 - AZOBR_RS14865 0.32 +0.5
108,643 + AZOBR_RS14865 0.34 +0.5
108,643 + AZOBR_RS14865 0.34 -3.3
108,853 + AZOBR_RS14865 0.42 +1.3
108,853 + AZOBR_RS14865 0.42 -1.9
108,853 + AZOBR_RS14865 0.42 +1.4
108,853 + AZOBR_RS14865 0.42 -1.1
108,853 + AZOBR_RS14865 0.42 -1.7
108,853 + AZOBR_RS14865 0.42 -1.0
108,854 - AZOBR_RS14865 0.42 +1.1
108,854 - AZOBR_RS14865 0.42 -0.1
108,854 - AZOBR_RS14865 0.42 +1.7
108,854 - AZOBR_RS14865 0.42 -0.2
108,854 - AZOBR_RS14865 0.42 -0.2
108,874 + AZOBR_RS14865 0.43 +0.3
108,875 - AZOBR_RS14865 0.43 -3.2
108,889 + AZOBR_RS14865 0.44 -0.1
108,889 + AZOBR_RS14865 0.44 -0.5
108,889 + AZOBR_RS14865 0.44 +1.0
108,920 - AZOBR_RS14865 0.45 +1.0
108,920 - AZOBR_RS14865 0.45 +0.6
108,920 - AZOBR_RS14865 0.45 -3.1
108,967 + AZOBR_RS14865 0.47 -0.0
108,968 - AZOBR_RS14865 0.47 -0.4
109,631 - AZOBR_RS14865 0.72 -1.0
109,874 - AZOBR_RS14865 0.81 -0.1
109,874 - AZOBR_RS14865 0.81 -2.3
109,969 + AZOBR_RS14865 0.84 +0.4
109,969 + AZOBR_RS14865 0.84 -0.7
110,111 - AZOBR_RS14865 0.90 +0.3
110,111 - AZOBR_RS14865 0.90 -1.0
110,580 + AZOBR_RS14870 0.29 -0.8
110,580 + AZOBR_RS14870 0.29 -0.1
110,581 - AZOBR_RS14870 0.29 -1.3
110,840 - -3.1
110,840 - +0.4
110,840 - +2.8
110,914 + -1.0
110,914 + +1.0
110,914 + -0.1
110,914 + -0.1
110,915 - +1.1
110,915 - -0.0
110,915 - -0.4
110,929 + +1.6
110,930 - +1.2
111,045 + -0.3
111,045 + -1.2
111,046 - +1.3
111,046 - -2.9

Or see this region's nucleotide sequence