Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS14520

Experiment: D-Cycloserine 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS14515 and AZOBR_RS14520 overlap by 4 nucleotidesAZOBR_RS14520 and AZOBR_RS14525 are separated by 1 nucleotides AZOBR_RS14515: AZOBR_RS14515 - oxidoreductase, at 25,685 to 27,142 _RS14515 AZOBR_RS14520: AZOBR_RS14520 - hydrogenase-4 component E, at 27,139 to 27,801 _RS14520 AZOBR_RS14525: AZOBR_RS14525 - formate hydrogenlyase, at 27,803 to 28,720 _RS14525 Position (kb) 27 28Strain fitness (log2 ratio) -2 -1 0 1 2at 26.222 kb on - strand, within AZOBR_RS14515at 26.238 kb on + strand, within AZOBR_RS14515at 26.625 kb on + strand, within AZOBR_RS14515at 26.625 kb on + strand, within AZOBR_RS14515at 26.625 kb on + strand, within AZOBR_RS14515at 26.625 kb on + strand, within AZOBR_RS14515at 26.626 kb on - strand, within AZOBR_RS14515at 26.626 kb on - strand, within AZOBR_RS14515at 26.626 kb on - strand, within AZOBR_RS14515at 26.626 kb on - strand, within AZOBR_RS14515at 26.683 kb on - strand, within AZOBR_RS14515at 26.683 kb on - strand, within AZOBR_RS14515at 26.683 kb on - strand, within AZOBR_RS14515at 26.829 kb on + strand, within AZOBR_RS14515at 26.829 kb on + strand, within AZOBR_RS14515at 26.829 kb on + strand, within AZOBR_RS14515at 26.830 kb on - strand, within AZOBR_RS14515at 26.830 kb on - strand, within AZOBR_RS14515at 26.830 kb on - strand, within AZOBR_RS14515at 26.830 kb on - strand, within AZOBR_RS14515at 26.830 kb on - strand, within AZOBR_RS14515at 26.830 kb on - strand, within AZOBR_RS14515at 26.841 kb on + strand, within AZOBR_RS14515at 26.841 kb on + strand, within AZOBR_RS14515at 26.842 kb on - strand, within AZOBR_RS14515at 26.842 kb on - strand, within AZOBR_RS14515at 26.895 kb on + strand, within AZOBR_RS14515at 26.896 kb on - strand, within AZOBR_RS14515at 26.952 kb on + strand, within AZOBR_RS14515at 26.952 kb on + strand, within AZOBR_RS14515at 26.952 kb on + strand, within AZOBR_RS14515at 26.952 kb on + strand, within AZOBR_RS14515at 26.952 kb on + strand, within AZOBR_RS14515at 26.953 kb on - strand, within AZOBR_RS14515at 27.529 kb on + strand, within AZOBR_RS14520at 27.529 kb on + strand, within AZOBR_RS14520at 27.530 kb on - strand, within AZOBR_RS14520at 27.530 kb on - strand, within AZOBR_RS14520at 27.530 kb on - strand, within AZOBR_RS14520at 27.623 kb on + strand, within AZOBR_RS14520at 27.623 kb on + strand, within AZOBR_RS14520at 27.624 kb on - strand, within AZOBR_RS14520at 27.624 kb on - strand, within AZOBR_RS14520at 27.647 kb on + strand, within AZOBR_RS14520at 27.647 kb on + strand, within AZOBR_RS14520at 27.648 kb on - strand, within AZOBR_RS14520at 27.786 kb on - strandat 27.822 kb on + strandat 27.823 kb on - strandat 28.047 kb on + strand, within AZOBR_RS14525at 28.047 kb on + strand, within AZOBR_RS14525at 28.047 kb on + strand, within AZOBR_RS14525at 28.047 kb on + strand, within AZOBR_RS14525at 28.048 kb on - strand, within AZOBR_RS14525at 28.048 kb on - strand, within AZOBR_RS14525at 28.542 kb on + strand, within AZOBR_RS14525at 28.542 kb on + strand, within AZOBR_RS14525at 28.543 kb on - strand, within AZOBR_RS14525at 28.734 kb on + strandat 28.735 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml
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26,222 - AZOBR_RS14515 0.37 +0.6
26,238 + AZOBR_RS14515 0.38 +0.7
26,625 + AZOBR_RS14515 0.64 -0.6
26,625 + AZOBR_RS14515 0.64 +0.1
26,625 + AZOBR_RS14515 0.64 +1.1
26,625 + AZOBR_RS14515 0.64 +0.3
26,626 - AZOBR_RS14515 0.65 +0.4
26,626 - AZOBR_RS14515 0.65 -0.9
26,626 - AZOBR_RS14515 0.65 +0.3
26,626 - AZOBR_RS14515 0.65 +0.8
26,683 - AZOBR_RS14515 0.68 +0.3
26,683 - AZOBR_RS14515 0.68 +0.5
26,683 - AZOBR_RS14515 0.68 -0.0
26,829 + AZOBR_RS14515 0.78 +0.2
26,829 + AZOBR_RS14515 0.78 +0.2
26,829 + AZOBR_RS14515 0.78 +0.0
26,830 - AZOBR_RS14515 0.79 +1.8
26,830 - AZOBR_RS14515 0.79 -2.3
26,830 - AZOBR_RS14515 0.79 +1.4
26,830 - AZOBR_RS14515 0.79 -0.2
26,830 - AZOBR_RS14515 0.79 +1.1
26,830 - AZOBR_RS14515 0.79 +0.0
26,841 + AZOBR_RS14515 0.79 +0.6
26,841 + AZOBR_RS14515 0.79 +0.0
26,842 - AZOBR_RS14515 0.79 +0.3
26,842 - AZOBR_RS14515 0.79 +0.5
26,895 + AZOBR_RS14515 0.83 -0.7
26,896 - AZOBR_RS14515 0.83 +1.4
26,952 + AZOBR_RS14515 0.87 -0.1
26,952 + AZOBR_RS14515 0.87 -0.2
26,952 + AZOBR_RS14515 0.87 +2.3
26,952 + AZOBR_RS14515 0.87 -0.5
26,952 + AZOBR_RS14515 0.87 -2.6
26,953 - AZOBR_RS14515 0.87 -1.2
27,529 + AZOBR_RS14520 0.59 -1.4
27,529 + AZOBR_RS14520 0.59 -0.4
27,530 - AZOBR_RS14520 0.59 +0.1
27,530 - AZOBR_RS14520 0.59 -0.3
27,530 - AZOBR_RS14520 0.59 +1.3
27,623 + AZOBR_RS14520 0.73 -1.6
27,623 + AZOBR_RS14520 0.73 -0.5
27,624 - AZOBR_RS14520 0.73 -2.1
27,624 - AZOBR_RS14520 0.73 +0.5
27,647 + AZOBR_RS14520 0.77 +0.7
27,647 + AZOBR_RS14520 0.77 -0.0
27,648 - AZOBR_RS14520 0.77 -2.3
27,786 - -2.1
27,822 + -2.3
27,823 - +0.2
28,047 + AZOBR_RS14525 0.27 -1.8
28,047 + AZOBR_RS14525 0.27 -1.3
28,047 + AZOBR_RS14525 0.27 +0.3
28,047 + AZOBR_RS14525 0.27 -0.5
28,048 - AZOBR_RS14525 0.27 +0.7
28,048 - AZOBR_RS14525 0.27 -0.0
28,542 + AZOBR_RS14525 0.81 +0.3
28,542 + AZOBR_RS14525 0.81 -1.1
28,543 - AZOBR_RS14525 0.81 -0.4
28,734 + -0.3
28,735 - +1.7

Or see this region's nucleotide sequence