Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS13205 and AZOBR_RS13210 are separated by 37 nucleotides AZOBR_RS13210 and AZOBR_RS13215 are separated by 15 nucleotides
AZOBR_RS13205: AZOBR_RS13205 - hypothetical protein, at 2,789,786 to 2,791,750
_RS13205
AZOBR_RS13210: AZOBR_RS13210 - hypothetical protein, at 2,791,788 to 2,793,032
_RS13210
AZOBR_RS13215: AZOBR_RS13215 - putative peptidase (S8 and S53 subtilisin kexin sedolisin family) (fragment), at 2,793,048 to 2,794,703
_RS13215
Position (kb)
2791
2792
2793
2794 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2790.898 kb on - strand, within AZOBR_RS13205 at 2790.898 kb on - strand, within AZOBR_RS13205 at 2791.070 kb on + strand, within AZOBR_RS13205 at 2791.070 kb on + strand, within AZOBR_RS13205 at 2791.070 kb on + strand, within AZOBR_RS13205 at 2791.071 kb on - strand, within AZOBR_RS13205 at 2791.071 kb on - strand, within AZOBR_RS13205 at 2791.142 kb on + strand, within AZOBR_RS13205 at 2791.247 kb on + strand, within AZOBR_RS13205 at 2791.247 kb on + strand, within AZOBR_RS13205 at 2791.248 kb on - strand, within AZOBR_RS13205 at 2791.248 kb on - strand, within AZOBR_RS13205 at 2791.248 kb on - strand, within AZOBR_RS13205 at 2791.248 kb on - strand, within AZOBR_RS13205 at 2791.248 kb on - strand, within AZOBR_RS13205 at 2791.254 kb on + strand, within AZOBR_RS13205 at 2791.254 kb on + strand, within AZOBR_RS13205 at 2791.255 kb on - strand, within AZOBR_RS13205 at 2791.255 kb on - strand, within AZOBR_RS13205 at 2791.255 kb on - strand, within AZOBR_RS13205 at 2791.255 kb on - strand, within AZOBR_RS13205 at 2791.255 kb on - strand, within AZOBR_RS13205 at 2791.846 kb on + strand at 2791.846 kb on + strand at 2791.847 kb on - strand at 2791.847 kb on - strand at 2791.847 kb on - strand at 2791.847 kb on - strand at 2792.063 kb on - strand, within AZOBR_RS13210 at 2792.383 kb on + strand, within AZOBR_RS13210 at 2792.383 kb on + strand, within AZOBR_RS13210 at 2792.383 kb on + strand, within AZOBR_RS13210 at 2792.384 kb on - strand, within AZOBR_RS13210 at 2792.384 kb on - strand, within AZOBR_RS13210 at 2792.522 kb on - strand, within AZOBR_RS13210 at 2792.587 kb on + strand, within AZOBR_RS13210 at 2792.587 kb on + strand, within AZOBR_RS13210 at 2792.587 kb on + strand, within AZOBR_RS13210 at 2792.936 kb on + strand at 2792.936 kb on + strand at 2792.937 kb on - strand at 2793.217 kb on + strand, within AZOBR_RS13215 at 2793.217 kb on + strand, within AZOBR_RS13215 at 2793.217 kb on + strand, within AZOBR_RS13215 at 2793.218 kb on - strand, within AZOBR_RS13215 at 2793.218 kb on - strand, within AZOBR_RS13215 at 2793.544 kb on + strand, within AZOBR_RS13215 at 2793.544 kb on + strand, within AZOBR_RS13215 at 2793.544 kb on + strand, within AZOBR_RS13215 at 2793.544 kb on + strand, within AZOBR_RS13215 at 2793.545 kb on - strand, within AZOBR_RS13215 at 2793.545 kb on - strand, within AZOBR_RS13215 at 2793.616 kb on + strand, within AZOBR_RS13215 at 2793.652 kb on + strand, within AZOBR_RS13215 at 2793.652 kb on + strand, within AZOBR_RS13215 at 2793.652 kb on + strand, within AZOBR_RS13215 at 2793.653 kb on - strand, within AZOBR_RS13215 at 2793.653 kb on - strand, within AZOBR_RS13215 at 2793.653 kb on - strand, within AZOBR_RS13215 at 2793.653 kb on - strand, within AZOBR_RS13215 at 2793.722 kb on - strand, within AZOBR_RS13215 at 2793.735 kb on + strand, within AZOBR_RS13215 at 2793.735 kb on + strand, within AZOBR_RS13215 at 2793.736 kb on - strand, within AZOBR_RS13215 at 2793.937 kb on - strand, within AZOBR_RS13215 at 2793.950 kb on - strand, within AZOBR_RS13215
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 2,790,898 - AZOBR_RS13205 0.57 +0.1 2,790,898 - AZOBR_RS13205 0.57 +0.4 2,791,070 + AZOBR_RS13205 0.65 +0.8 2,791,070 + AZOBR_RS13205 0.65 -0.6 2,791,070 + AZOBR_RS13205 0.65 -0.1 2,791,071 - AZOBR_RS13205 0.65 -1.4 2,791,071 - AZOBR_RS13205 0.65 -2.1 2,791,142 + AZOBR_RS13205 0.69 -3.0 2,791,247 + AZOBR_RS13205 0.74 -1.7 2,791,247 + AZOBR_RS13205 0.74 +1.1 2,791,248 - AZOBR_RS13205 0.74 -0.1 2,791,248 - AZOBR_RS13205 0.74 +0.7 2,791,248 - AZOBR_RS13205 0.74 +0.5 2,791,248 - AZOBR_RS13205 0.74 +0.5 2,791,248 - AZOBR_RS13205 0.74 -0.7 2,791,254 + AZOBR_RS13205 0.75 -3.1 2,791,254 + AZOBR_RS13205 0.75 +0.4 2,791,255 - AZOBR_RS13205 0.75 -0.2 2,791,255 - AZOBR_RS13205 0.75 -2.1 2,791,255 - AZOBR_RS13205 0.75 +0.3 2,791,255 - AZOBR_RS13205 0.75 +2.0 2,791,255 - AZOBR_RS13205 0.75 +1.0 2,791,846 + +1.5 2,791,846 + -1.2 2,791,847 - -2.8 2,791,847 - -1.2 2,791,847 - +2.1 2,791,847 - -3.0 2,792,063 - AZOBR_RS13210 0.22 -0.4 2,792,383 + AZOBR_RS13210 0.48 +1.2 2,792,383 + AZOBR_RS13210 0.48 +0.5 2,792,383 + AZOBR_RS13210 0.48 -1.3 2,792,384 - AZOBR_RS13210 0.48 -2.6 2,792,384 - AZOBR_RS13210 0.48 -2.0 2,792,522 - AZOBR_RS13210 0.59 +0.3 2,792,587 + AZOBR_RS13210 0.64 -0.3 2,792,587 + AZOBR_RS13210 0.64 -1.2 2,792,587 + AZOBR_RS13210 0.64 -0.4 2,792,936 + +0.4 2,792,936 + +1.2 2,792,937 - +0.3 2,793,217 + AZOBR_RS13215 0.10 -0.7 2,793,217 + AZOBR_RS13215 0.10 +0.5 2,793,217 + AZOBR_RS13215 0.10 +0.7 2,793,218 - AZOBR_RS13215 0.10 +0.9 2,793,218 - AZOBR_RS13215 0.10 -0.0 2,793,544 + AZOBR_RS13215 0.30 -3.6 2,793,544 + AZOBR_RS13215 0.30 +0.7 2,793,544 + AZOBR_RS13215 0.30 -3.9 2,793,544 + AZOBR_RS13215 0.30 +0.8 2,793,545 - AZOBR_RS13215 0.30 +0.3 2,793,545 - AZOBR_RS13215 0.30 +2.0 2,793,616 + AZOBR_RS13215 0.34 -0.3 2,793,652 + AZOBR_RS13215 0.36 +0.9 2,793,652 + AZOBR_RS13215 0.36 +0.1 2,793,652 + AZOBR_RS13215 0.36 -2.7 2,793,653 - AZOBR_RS13215 0.37 -3.3 2,793,653 - AZOBR_RS13215 0.37 +0.7 2,793,653 - AZOBR_RS13215 0.37 -0.8 2,793,653 - AZOBR_RS13215 0.37 -0.0 2,793,722 - AZOBR_RS13215 0.41 -0.2 2,793,735 + AZOBR_RS13215 0.41 -0.4 2,793,735 + AZOBR_RS13215 0.41 +0.5 2,793,736 - AZOBR_RS13215 0.42 -0.5 2,793,937 - AZOBR_RS13215 0.54 +1.0 2,793,950 - AZOBR_RS13215 0.54 -0.0
Or see this region's nucleotide sequence