Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS10510 and AZOBR_RS10515 are separated by 149 nucleotides AZOBR_RS10515 and AZOBR_RS10520 are separated by 29 nucleotides AZOBR_RS10520 and AZOBR_RS10525 are separated by 158 nucleotides AZOBR_RS10525 and AZOBR_RS10530 are separated by 73 nucleotides
AZOBR_RS10510: AZOBR_RS10510 - amP-dependent synthetase and ligase, at 2,204,873 to 2,206,471
_RS10510
AZOBR_RS10515: AZOBR_RS10515 - alkyl hydroperoxide reductase, at 2,206,621 to 2,207,103
_RS10515
AZOBR_RS10520: AZOBR_RS10520 - copper-resistance protein, at 2,207,133 to 2,209,217
_RS10520
AZOBR_RS10525: AZOBR_RS10525 - hypothetical protein, at 2,209,376 to 2,209,951
_RS10525
AZOBR_RS10530: AZOBR_RS10530 - hypothetical protein, at 2,210,025 to 2,210,270
_RS10530
Position (kb)
2207
2208
2209
2210 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2206.167 kb on - strand, within AZOBR_RS10510 at 2206.167 kb on - strand, within AZOBR_RS10510 at 2206.220 kb on + strand, within AZOBR_RS10510 at 2206.221 kb on - strand, within AZOBR_RS10510 at 2206.343 kb on + strand at 2206.456 kb on + strand at 2206.481 kb on + strand at 2206.481 kb on + strand at 2206.481 kb on + strand at 2206.481 kb on + strand at 2206.481 kb on + strand at 2206.482 kb on - strand at 2206.482 kb on - strand at 2206.482 kb on - strand at 2206.610 kb on + strand at 2206.623 kb on - strand at 2209.236 kb on - strand at 2209.272 kb on + strand at 2209.272 kb on + strand at 2209.272 kb on + strand at 2209.273 kb on - strand at 2209.273 kb on - strand at 2209.273 kb on - strand at 2209.273 kb on - strand at 2209.274 kb on + strand at 2209.275 kb on - strand at 2209.275 kb on - strand at 2209.362 kb on + strand at 2209.368 kb on + strand at 2209.369 kb on - strand at 2209.472 kb on + strand, within AZOBR_RS10525 at 2209.472 kb on + strand, within AZOBR_RS10525 at 2209.473 kb on - strand, within AZOBR_RS10525 at 2209.473 kb on - strand, within AZOBR_RS10525 at 2209.473 kb on - strand, within AZOBR_RS10525 at 2209.473 kb on - strand, within AZOBR_RS10525 at 2209.473 kb on - strand, within AZOBR_RS10525 at 2209.473 kb on - strand, within AZOBR_RS10525 at 2209.474 kb on + strand, within AZOBR_RS10525 at 2209.474 kb on + strand, within AZOBR_RS10525 at 2209.475 kb on - strand, within AZOBR_RS10525 at 2209.475 kb on - strand, within AZOBR_RS10525 at 2209.475 kb on - strand, within AZOBR_RS10525 at 2209.475 kb on - strand, within AZOBR_RS10525 at 2209.608 kb on - strand, within AZOBR_RS10525 at 2209.659 kb on - strand, within AZOBR_RS10525 at 2209.659 kb on - strand, within AZOBR_RS10525 at 2209.776 kb on - strand, within AZOBR_RS10525 at 2209.776 kb on - strand, within AZOBR_RS10525 at 2210.020 kb on - strand at 2210.022 kb on - strand at 2210.146 kb on + strand, within AZOBR_RS10530 at 2210.185 kb on + strand, within AZOBR_RS10530 at 2210.185 kb on + strand, within AZOBR_RS10530
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 2,206,167 - AZOBR_RS10510 0.81 +0.2 2,206,167 - AZOBR_RS10510 0.81 +0.6 2,206,220 + AZOBR_RS10510 0.84 +0.7 2,206,221 - AZOBR_RS10510 0.84 -1.4 2,206,343 + +1.0 2,206,456 + -0.7 2,206,481 + -0.3 2,206,481 + -0.5 2,206,481 + +1.7 2,206,481 + -0.9 2,206,481 + +0.1 2,206,482 - +0.3 2,206,482 - -1.4 2,206,482 - -0.9 2,206,610 + -1.5 2,206,623 - +0.0 2,209,236 - +0.8 2,209,272 + +1.1 2,209,272 + -1.4 2,209,272 + -3.1 2,209,273 - -2.4 2,209,273 - +0.5 2,209,273 - +0.4 2,209,273 - +0.9 2,209,274 + +0.6 2,209,275 - +2.2 2,209,275 - -0.3 2,209,362 + -3.1 2,209,368 + -0.2 2,209,369 - -0.1 2,209,472 + AZOBR_RS10525 0.17 +0.2 2,209,472 + AZOBR_RS10525 0.17 -2.6 2,209,473 - AZOBR_RS10525 0.17 +0.4 2,209,473 - AZOBR_RS10525 0.17 +0.3 2,209,473 - AZOBR_RS10525 0.17 -1.5 2,209,473 - AZOBR_RS10525 0.17 +0.3 2,209,473 - AZOBR_RS10525 0.17 +0.4 2,209,473 - AZOBR_RS10525 0.17 -0.4 2,209,474 + AZOBR_RS10525 0.17 -0.3 2,209,474 + AZOBR_RS10525 0.17 -1.9 2,209,475 - AZOBR_RS10525 0.17 +0.1 2,209,475 - AZOBR_RS10525 0.17 -4.3 2,209,475 - AZOBR_RS10525 0.17 +0.3 2,209,475 - AZOBR_RS10525 0.17 -1.3 2,209,608 - AZOBR_RS10525 0.40 -0.1 2,209,659 - AZOBR_RS10525 0.49 +0.8 2,209,659 - AZOBR_RS10525 0.49 +1.7 2,209,776 - AZOBR_RS10525 0.69 +0.6 2,209,776 - AZOBR_RS10525 0.69 -0.1 2,210,020 - +0.2 2,210,022 - -0.7 2,210,146 + AZOBR_RS10530 0.49 -2.8 2,210,185 + AZOBR_RS10530 0.65 +0.1 2,210,185 + AZOBR_RS10530 0.65 -1.2
Or see this region's nucleotide sequence