Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS09735

Experiment: D-Cycloserine 0.125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS09730 and AZOBR_RS09735 are separated by 217 nucleotidesAZOBR_RS09735 and AZOBR_RS09740 are separated by 61 nucleotides AZOBR_RS09730: AZOBR_RS09730 - phospho-2-dehydro-3-deoxyheptonate aldolase, at 2,037,841 to 2,039,226 _RS09730 AZOBR_RS09735: AZOBR_RS09735 - MFS transporter permease, at 2,039,444 to 2,040,793 _RS09735 AZOBR_RS09740: AZOBR_RS09740 - Mn-containing catalase, at 2,040,855 to 2,041,751 _RS09740 Position (kb) 2039 2040 2041Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 2039.250 kb on - strandat 2039.250 kb on - strandat 2039.250 kb on - strandat 2039.296 kb on - strandat 2039.296 kb on - strandat 2039.296 kb on - strandat 2039.296 kb on - strandat 2039.404 kb on + strandat 2039.404 kb on + strandat 2039.405 kb on - strandat 2039.416 kb on + strandat 2039.993 kb on + strand, within AZOBR_RS09735at 2039.993 kb on + strand, within AZOBR_RS09735at 2039.996 kb on + strand, within AZOBR_RS09735at 2039.996 kb on + strand, within AZOBR_RS09735at 2039.996 kb on + strand, within AZOBR_RS09735at 2039.997 kb on - strand, within AZOBR_RS09735at 2040.165 kb on - strand, within AZOBR_RS09735at 2040.242 kb on + strand, within AZOBR_RS09735at 2040.242 kb on + strand, within AZOBR_RS09735at 2040.243 kb on - strandat 2040.243 kb on - strand, within AZOBR_RS09735at 2040.287 kb on + strand, within AZOBR_RS09735at 2040.287 kb on + strand, within AZOBR_RS09735at 2040.288 kb on - strand, within AZOBR_RS09735at 2040.288 kb on - strand, within AZOBR_RS09735at 2040.584 kb on + strand, within AZOBR_RS09735at 2040.599 kb on + strand, within AZOBR_RS09735at 2040.620 kb on + strand, within AZOBR_RS09735at 2040.620 kb on + strand, within AZOBR_RS09735at 2040.620 kb on + strand, within AZOBR_RS09735at 2040.856 kb on + strandat 2040.857 kb on - strandat 2041.111 kb on + strand, within AZOBR_RS09740at 2041.111 kb on + strand, within AZOBR_RS09740at 2041.111 kb on + strand, within AZOBR_RS09740at 2041.111 kb on + strand, within AZOBR_RS09740at 2041.112 kb on - strand, within AZOBR_RS09740at 2041.112 kb on - strand, within AZOBR_RS09740at 2041.112 kb on - strand, within AZOBR_RS09740at 2041.114 kb on + strand, within AZOBR_RS09740at 2041.115 kb on - strand, within AZOBR_RS09740at 2041.177 kb on + strand, within AZOBR_RS09740at 2041.282 kb on + strand, within AZOBR_RS09740at 2041.282 kb on + strand, within AZOBR_RS09740at 2041.283 kb on - strand, within AZOBR_RS09740at 2041.283 kb on - strand, within AZOBR_RS09740at 2041.283 kb on - strand, within AZOBR_RS09740at 2041.283 kb on - strand, within AZOBR_RS09740at 2041.357 kb on + strand, within AZOBR_RS09740at 2041.357 kb on + strand, within AZOBR_RS09740at 2041.358 kb on - strand, within AZOBR_RS09740at 2041.358 kb on - strand, within AZOBR_RS09740at 2041.459 kb on + strand, within AZOBR_RS09740at 2041.628 kb on - strand, within AZOBR_RS09740at 2041.724 kb on - strandat 2041.755 kb on + strandat 2041.755 kb on + strandat 2041.756 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml
remove
2,039,250 - +1.1
2,039,250 - -0.2
2,039,250 - -2.3
2,039,296 - -0.4
2,039,296 - -2.6
2,039,296 - -1.0
2,039,296 - -2.5
2,039,404 + +0.9
2,039,404 + -0.4
2,039,405 - +0.6
2,039,416 + -0.3
2,039,993 + AZOBR_RS09735 0.41 -2.1
2,039,993 + AZOBR_RS09735 0.41 -5.2
2,039,996 + AZOBR_RS09735 0.41 -0.8
2,039,996 + AZOBR_RS09735 0.41 -1.0
2,039,996 + AZOBR_RS09735 0.41 +0.2
2,039,997 - AZOBR_RS09735 0.41 -0.9
2,040,165 - AZOBR_RS09735 0.53 +1.0
2,040,242 + AZOBR_RS09735 0.59 -2.6
2,040,242 + AZOBR_RS09735 0.59 -1.9
2,040,243 - -1.3
2,040,243 - AZOBR_RS09735 0.59 -2.1
2,040,287 + AZOBR_RS09735 0.62 -1.5
2,040,287 + AZOBR_RS09735 0.62 -1.8
2,040,288 - AZOBR_RS09735 0.63 +0.6
2,040,288 - AZOBR_RS09735 0.63 -0.4
2,040,584 + AZOBR_RS09735 0.84 +0.7
2,040,599 + AZOBR_RS09735 0.86 -2.8
2,040,620 + AZOBR_RS09735 0.87 -1.3
2,040,620 + AZOBR_RS09735 0.87 +0.5
2,040,620 + AZOBR_RS09735 0.87 +0.5
2,040,856 + -3.5
2,040,857 - +1.2
2,041,111 + AZOBR_RS09740 0.29 +1.6
2,041,111 + AZOBR_RS09740 0.29 +0.9
2,041,111 + AZOBR_RS09740 0.29 +0.7
2,041,111 + AZOBR_RS09740 0.29 -1.2
2,041,112 - AZOBR_RS09740 0.29 +1.3
2,041,112 - AZOBR_RS09740 0.29 -4.0
2,041,112 - AZOBR_RS09740 0.29 +0.3
2,041,114 + AZOBR_RS09740 0.29 +0.9
2,041,115 - AZOBR_RS09740 0.29 -0.2
2,041,177 + AZOBR_RS09740 0.36 -0.2
2,041,282 + AZOBR_RS09740 0.48 -0.9
2,041,282 + AZOBR_RS09740 0.48 +0.7
2,041,283 - AZOBR_RS09740 0.48 +0.7
2,041,283 - AZOBR_RS09740 0.48 -3.1
2,041,283 - AZOBR_RS09740 0.48 -0.6
2,041,283 - AZOBR_RS09740 0.48 +0.3
2,041,357 + AZOBR_RS09740 0.56 -0.1
2,041,357 + AZOBR_RS09740 0.56 +0.3
2,041,358 - AZOBR_RS09740 0.56 -0.5
2,041,358 - AZOBR_RS09740 0.56 -0.7
2,041,459 + AZOBR_RS09740 0.67 +0.7
2,041,628 - AZOBR_RS09740 0.86 +2.4
2,041,724 - +0.8
2,041,755 + -1.2
2,041,755 + +0.9
2,041,756 - -0.3

Or see this region's nucleotide sequence