Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS09730

Experiment: D-Cycloserine 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS09720 and AZOBR_RS09725 are separated by 139 nucleotidesAZOBR_RS09725 and AZOBR_RS09730 are separated by 141 nucleotidesAZOBR_RS09730 and AZOBR_RS09735 are separated by 217 nucleotides AZOBR_RS09720: AZOBR_RS09720 - succinate-semialdehyde dehdyrogenase, at 2,035,614 to 2,037,107 _RS09720 AZOBR_RS09725: AZOBR_RS09725 - hypothetical protein, at 2,037,247 to 2,037,699 _RS09725 AZOBR_RS09730: AZOBR_RS09730 - phospho-2-dehydro-3-deoxyheptonate aldolase, at 2,037,841 to 2,039,226 _RS09730 AZOBR_RS09735: AZOBR_RS09735 - MFS transporter permease, at 2,039,444 to 2,040,793 _RS09735 Position (kb) 2037 2038 2039 2040Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2036.898 kb on + strand, within AZOBR_RS09720at 2036.899 kb on - strand, within AZOBR_RS09720at 2036.904 kb on + strand, within AZOBR_RS09720at 2036.904 kb on + strand, within AZOBR_RS09720at 2036.905 kb on - strand, within AZOBR_RS09720at 2036.953 kb on - strand, within AZOBR_RS09720at 2037.200 kb on - strandat 2037.200 kb on - strandat 2037.409 kb on + strand, within AZOBR_RS09725at 2037.409 kb on + strand, within AZOBR_RS09725at 2037.410 kb on - strand, within AZOBR_RS09725at 2037.410 kb on - strand, within AZOBR_RS09725at 2037.842 kb on + strandat 2037.842 kb on + strandat 2037.843 kb on - strandat 2039.250 kb on - strandat 2039.250 kb on - strandat 2039.250 kb on - strandat 2039.296 kb on - strandat 2039.296 kb on - strandat 2039.296 kb on - strandat 2039.296 kb on - strandat 2039.404 kb on + strandat 2039.404 kb on + strandat 2039.405 kb on - strandat 2039.416 kb on + strandat 2039.993 kb on + strand, within AZOBR_RS09735at 2039.993 kb on + strand, within AZOBR_RS09735at 2039.996 kb on + strand, within AZOBR_RS09735at 2039.996 kb on + strand, within AZOBR_RS09735at 2039.996 kb on + strand, within AZOBR_RS09735at 2039.997 kb on - strand, within AZOBR_RS09735at 2040.165 kb on - strand, within AZOBR_RS09735

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml
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2,036,898 + AZOBR_RS09720 0.86 +0.9
2,036,899 - AZOBR_RS09720 0.86 -3.9
2,036,904 + AZOBR_RS09720 0.86 +1.3
2,036,904 + AZOBR_RS09720 0.86 +0.6
2,036,905 - AZOBR_RS09720 0.86 -1.8
2,036,953 - AZOBR_RS09720 0.90 +1.4
2,037,200 - -0.6
2,037,200 - +0.0
2,037,409 + AZOBR_RS09725 0.36 -0.2
2,037,409 + AZOBR_RS09725 0.36 -1.1
2,037,410 - AZOBR_RS09725 0.36 +0.4
2,037,410 - AZOBR_RS09725 0.36 -4.1
2,037,842 + +0.5
2,037,842 + -0.8
2,037,843 - -4.1
2,039,250 - +1.1
2,039,250 - -0.2
2,039,250 - -2.3
2,039,296 - -0.4
2,039,296 - -2.6
2,039,296 - -1.0
2,039,296 - -2.5
2,039,404 + +0.9
2,039,404 + -0.4
2,039,405 - +0.6
2,039,416 + -0.3
2,039,993 + AZOBR_RS09735 0.41 -2.1
2,039,993 + AZOBR_RS09735 0.41 -5.2
2,039,996 + AZOBR_RS09735 0.41 -0.8
2,039,996 + AZOBR_RS09735 0.41 -1.0
2,039,996 + AZOBR_RS09735 0.41 +0.2
2,039,997 - AZOBR_RS09735 0.41 -0.9
2,040,165 - AZOBR_RS09735 0.53 +1.0

Or see this region's nucleotide sequence