Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS09720 and AZOBR_RS09725 are separated by 139 nucleotides AZOBR_RS09725 and AZOBR_RS09730 are separated by 141 nucleotides AZOBR_RS09730 and AZOBR_RS09735 are separated by 217 nucleotides
AZOBR_RS09720: AZOBR_RS09720 - succinate-semialdehyde dehdyrogenase, at 2,035,614 to 2,037,107
_RS09720
AZOBR_RS09725: AZOBR_RS09725 - hypothetical protein, at 2,037,247 to 2,037,699
_RS09725
AZOBR_RS09730: AZOBR_RS09730 - phospho-2-dehydro-3-deoxyheptonate aldolase, at 2,037,841 to 2,039,226
_RS09730
AZOBR_RS09735: AZOBR_RS09735 - MFS transporter permease, at 2,039,444 to 2,040,793
_RS09735
Position (kb)
2037
2038
2039
2040 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 2036.898 kb on + strand, within AZOBR_RS09720 at 2036.899 kb on - strand, within AZOBR_RS09720 at 2036.904 kb on + strand, within AZOBR_RS09720 at 2036.904 kb on + strand, within AZOBR_RS09720 at 2036.905 kb on - strand, within AZOBR_RS09720 at 2036.953 kb on - strand, within AZOBR_RS09720 at 2037.200 kb on - strand at 2037.200 kb on - strand at 2037.409 kb on + strand, within AZOBR_RS09725 at 2037.409 kb on + strand, within AZOBR_RS09725 at 2037.410 kb on - strand, within AZOBR_RS09725 at 2037.410 kb on - strand, within AZOBR_RS09725 at 2037.842 kb on + strand at 2037.842 kb on + strand at 2037.843 kb on - strand at 2039.250 kb on - strand at 2039.250 kb on - strand at 2039.250 kb on - strand at 2039.296 kb on - strand at 2039.296 kb on - strand at 2039.296 kb on - strand at 2039.296 kb on - strand at 2039.404 kb on + strand at 2039.404 kb on + strand at 2039.405 kb on - strand at 2039.416 kb on + strand at 2039.993 kb on + strand, within AZOBR_RS09735 at 2039.993 kb on + strand, within AZOBR_RS09735 at 2039.996 kb on + strand, within AZOBR_RS09735 at 2039.996 kb on + strand, within AZOBR_RS09735 at 2039.996 kb on + strand, within AZOBR_RS09735 at 2039.997 kb on - strand, within AZOBR_RS09735 at 2040.165 kb on - strand, within AZOBR_RS09735
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 2,036,898 + AZOBR_RS09720 0.86 +0.9 2,036,899 - AZOBR_RS09720 0.86 -3.9 2,036,904 + AZOBR_RS09720 0.86 +1.3 2,036,904 + AZOBR_RS09720 0.86 +0.6 2,036,905 - AZOBR_RS09720 0.86 -1.8 2,036,953 - AZOBR_RS09720 0.90 +1.4 2,037,200 - -0.6 2,037,200 - +0.0 2,037,409 + AZOBR_RS09725 0.36 -0.2 2,037,409 + AZOBR_RS09725 0.36 -1.1 2,037,410 - AZOBR_RS09725 0.36 +0.4 2,037,410 - AZOBR_RS09725 0.36 -4.1 2,037,842 + +0.5 2,037,842 + -0.8 2,037,843 - -4.1 2,039,250 - +1.1 2,039,250 - -0.2 2,039,250 - -2.3 2,039,296 - -0.4 2,039,296 - -2.6 2,039,296 - -1.0 2,039,296 - -2.5 2,039,404 + +0.9 2,039,404 + -0.4 2,039,405 - +0.6 2,039,416 + -0.3 2,039,993 + AZOBR_RS09735 0.41 -2.1 2,039,993 + AZOBR_RS09735 0.41 -5.2 2,039,996 + AZOBR_RS09735 0.41 -0.8 2,039,996 + AZOBR_RS09735 0.41 -1.0 2,039,996 + AZOBR_RS09735 0.41 +0.2 2,039,997 - AZOBR_RS09735 0.41 -0.9 2,040,165 - AZOBR_RS09735 0.53 +1.0
Or see this region's nucleotide sequence