Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS09515 and AZOBR_RS09520 are separated by 54 nucleotides AZOBR_RS09520 and AZOBR_RS09525 are separated by 193 nucleotides AZOBR_RS09525 and AZOBR_RS09530 are separated by 93 nucleotides
AZOBR_RS09515: AZOBR_RS09515 - heme ABC transporter ATP-binding protein, at 1,991,415 to 1,993,091
_RS09515
AZOBR_RS09520: AZOBR_RS09520 - hypothetical protein, at 1,993,146 to 1,994,627
_RS09520
AZOBR_RS09525: AZOBR_RS09525 - toluene tolerance protein, at 1,994,821 to 1,995,438
_RS09525
AZOBR_RS09530: AZOBR_RS09530 - VacJ-like lipoprotein, at 1,995,532 to 1,996,308
_RS09530
Position (kb)
1993
1994
1995 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1992.150 kb on + strand, within AZOBR_RS09515 at 1992.151 kb on - strand, within AZOBR_RS09515 at 1992.151 kb on - strand, within AZOBR_RS09515 at 1993.068 kb on + strand at 1993.068 kb on + strand at 1993.068 kb on + strand at 1993.068 kb on + strand at 1993.211 kb on - strand at 1993.358 kb on - strand, within AZOBR_RS09520 at 1993.438 kb on + strand, within AZOBR_RS09520 at 1993.976 kb on - strand, within AZOBR_RS09520 at 1994.020 kb on + strand, within AZOBR_RS09520 at 1994.021 kb on - strand, within AZOBR_RS09520 at 1994.491 kb on - strand at 1994.681 kb on - strand at 1994.785 kb on + strand at 1994.785 kb on + strand at 1994.785 kb on + strand at 1994.785 kb on + strand at 1994.785 kb on + strand at 1994.785 kb on + strand at 1994.786 kb on - strand at 1994.786 kb on - strand at 1994.964 kb on - strand, within AZOBR_RS09525 at 1995.099 kb on - strand, within AZOBR_RS09525 at 1995.156 kb on - strand, within AZOBR_RS09525 at 1995.219 kb on - strand, within AZOBR_RS09525 at 1995.239 kb on + strand, within AZOBR_RS09525 at 1995.533 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 1,992,150 + AZOBR_RS09515 0.44 -1.6 1,992,151 - AZOBR_RS09515 0.44 -0.3 1,992,151 - AZOBR_RS09515 0.44 -2.2 1,993,068 + -2.8 1,993,068 + -1.1 1,993,068 + -0.2 1,993,068 + -0.2 1,993,211 - +1.0 1,993,358 - AZOBR_RS09520 0.14 -0.4 1,993,438 + AZOBR_RS09520 0.20 -4.7 1,993,976 - AZOBR_RS09520 0.56 -0.1 1,994,020 + AZOBR_RS09520 0.59 -2.5 1,994,021 - AZOBR_RS09520 0.59 -0.8 1,994,491 - -2.5 1,994,681 - +0.5 1,994,785 + +0.5 1,994,785 + +0.4 1,994,785 + +0.9 1,994,785 + +0.4 1,994,785 + -2.6 1,994,785 + +0.3 1,994,786 - +0.3 1,994,786 - +0.2 1,994,964 - AZOBR_RS09525 0.23 +2.1 1,995,099 - AZOBR_RS09525 0.45 +0.2 1,995,156 - AZOBR_RS09525 0.54 +3.0 1,995,219 - AZOBR_RS09525 0.64 +3.0 1,995,239 + AZOBR_RS09525 0.68 +1.6 1,995,533 + -0.3
Or see this region's nucleotide sequence