Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS09125 and AZOBR_RS09130 are separated by 102 nucleotides AZOBR_RS09130 and AZOBR_RS09135 overlap by 32 nucleotides AZOBR_RS09135 and AZOBR_RS09140 are separated by 260 nucleotides
AZOBR_RS09125: AZOBR_RS09125 - hypothetical protein, at 1,906,517 to 1,907,905
_RS09125
AZOBR_RS09130: AZOBR_RS09130 - conserved membrane protein of unknown function, at 1,908,008 to 1,908,946
_RS09130
AZOBR_RS09135: AZOBR_RS09135 - GCN5 family acetyltransferase, at 1,908,915 to 1,909,355
_RS09135
AZOBR_RS09140: AZOBR_RS09140 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 1,909,616 to 1,910,920
_RS09140
Position (kb) 1908
1909 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1907.525 kb on + strand, within AZOBR_RS09125 at 1907.525 kb on + strand, within AZOBR_RS09125 at 1907.525 kb on + strand, within AZOBR_RS09125 at 1907.526 kb on - strand, within AZOBR_RS09125 at 1907.526 kb on - strand, within AZOBR_RS09125 at 1907.526 kb on - strand, within AZOBR_RS09125 at 1907.564 kb on + strand, within AZOBR_RS09125 at 1907.565 kb on - strand, within AZOBR_RS09125 at 1907.565 kb on - strand, within AZOBR_RS09125 at 1907.733 kb on + strand, within AZOBR_RS09125 at 1907.733 kb on + strand, within AZOBR_RS09125 at 1907.734 kb on - strand, within AZOBR_RS09125 at 1907.734 kb on - strand, within AZOBR_RS09125 at 1907.735 kb on + strand, within AZOBR_RS09125 at 1907.735 kb on + strand, within AZOBR_RS09125 at 1907.736 kb on - strand, within AZOBR_RS09125 at 1907.736 kb on - strand, within AZOBR_RS09125 at 1908.053 kb on + strand at 1908.054 kb on - strand at 1908.290 kb on + strand, within AZOBR_RS09130 at 1908.291 kb on - strand, within AZOBR_RS09130 at 1908.291 kb on - strand, within AZOBR_RS09130 at 1908.291 kb on - strand, within AZOBR_RS09130 at 1908.336 kb on - strand, within AZOBR_RS09130 at 1908.455 kb on + strand, within AZOBR_RS09130 at 1908.531 kb on - strand, within AZOBR_RS09130 at 1908.645 kb on - strand, within AZOBR_RS09130 at 1908.720 kb on - strand at 1908.729 kb on - strand, within AZOBR_RS09130 at 1909.015 kb on + strand, within AZOBR_RS09135 at 1909.040 kb on - strand, within AZOBR_RS09135 at 1909.045 kb on + strand, within AZOBR_RS09135 at 1909.046 kb on - strand, within AZOBR_RS09135 at 1909.046 kb on - strand, within AZOBR_RS09135 at 1909.150 kb on + strand, within AZOBR_RS09135 at 1909.151 kb on - strand, within AZOBR_RS09135 at 1909.151 kb on - strand, within AZOBR_RS09135 at 1909.159 kb on + strand, within AZOBR_RS09135 at 1909.159 kb on + strand, within AZOBR_RS09135 at 1909.396 kb on - strand at 1909.472 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 1,907,525 + AZOBR_RS09125 0.73 +1.2 1,907,525 + AZOBR_RS09125 0.73 -2.7 1,907,525 + AZOBR_RS09125 0.73 -2.0 1,907,526 - AZOBR_RS09125 0.73 -0.8 1,907,526 - AZOBR_RS09125 0.73 -1.0 1,907,526 - AZOBR_RS09125 0.73 +2.4 1,907,564 + AZOBR_RS09125 0.75 +1.4 1,907,565 - AZOBR_RS09125 0.75 -1.4 1,907,565 - AZOBR_RS09125 0.75 -2.3 1,907,733 + AZOBR_RS09125 0.88 -1.3 1,907,733 + AZOBR_RS09125 0.88 -0.4 1,907,734 - AZOBR_RS09125 0.88 -0.3 1,907,734 - AZOBR_RS09125 0.88 +2.1 1,907,735 + AZOBR_RS09125 0.88 -1.0 1,907,735 + AZOBR_RS09125 0.88 -0.1 1,907,736 - AZOBR_RS09125 0.88 +1.6 1,907,736 - AZOBR_RS09125 0.88 +0.7 1,908,053 + -0.6 1,908,054 - +0.2 1,908,290 + AZOBR_RS09130 0.30 +0.7 1,908,291 - AZOBR_RS09130 0.30 +0.7 1,908,291 - AZOBR_RS09130 0.30 -0.3 1,908,291 - AZOBR_RS09130 0.30 -2.8 1,908,336 - AZOBR_RS09130 0.35 +0.4 1,908,455 + AZOBR_RS09130 0.48 -2.7 1,908,531 - AZOBR_RS09130 0.56 +0.3 1,908,645 - AZOBR_RS09130 0.68 +0.7 1,908,720 - -0.5 1,908,729 - AZOBR_RS09130 0.77 -0.1 1,909,015 + AZOBR_RS09135 0.23 -0.3 1,909,040 - AZOBR_RS09135 0.28 -1.3 1,909,045 + AZOBR_RS09135 0.29 +0.4 1,909,046 - AZOBR_RS09135 0.30 -0.2 1,909,046 - AZOBR_RS09135 0.30 +0.9 1,909,150 + AZOBR_RS09135 0.53 -0.1 1,909,151 - AZOBR_RS09135 0.54 -1.8 1,909,151 - AZOBR_RS09135 0.54 -1.1 1,909,159 + AZOBR_RS09135 0.55 -0.9 1,909,159 + AZOBR_RS09135 0.55 +0.6 1,909,396 - +1.5 1,909,472 + +1.5
Or see this region's nucleotide sequence