Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS08505

Experiment: D-Cycloserine 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS08500 and AZOBR_RS08505 are separated by 39 nucleotidesAZOBR_RS08505 and AZOBR_RS08510 are separated by 51 nucleotides AZOBR_RS08500: AZOBR_RS08500 - ABC transporter permease, at 1,782,860 to 1,783,843 _RS08500 AZOBR_RS08505: AZOBR_RS08505 - hypothetical protein, at 1,783,883 to 1,784,560 _RS08505 AZOBR_RS08510: AZOBR_RS08510 - alanine dehydrogenase, at 1,784,612 to 1,785,730 _RS08510 Position (kb) 1783 1784 1785Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1782.977 kb on + strand, within AZOBR_RS08500at 1782.977 kb on + strand, within AZOBR_RS08500at 1783.005 kb on - strand, within AZOBR_RS08500at 1783.106 kb on + strand, within AZOBR_RS08500at 1783.106 kb on + strand, within AZOBR_RS08500at 1783.107 kb on - strand, within AZOBR_RS08500at 1783.107 kb on - strand, within AZOBR_RS08500at 1783.107 kb on - strand, within AZOBR_RS08500at 1783.232 kb on + strand, within AZOBR_RS08500at 1783.232 kb on + strand, within AZOBR_RS08500at 1783.232 kb on + strand, within AZOBR_RS08500at 1783.232 kb on + strand, within AZOBR_RS08500at 1783.379 kb on + strand, within AZOBR_RS08500at 1783.379 kb on + strand, within AZOBR_RS08500at 1783.379 kb on + strand, within AZOBR_RS08500at 1783.379 kb on + strand, within AZOBR_RS08500at 1783.382 kb on + strand, within AZOBR_RS08500at 1783.382 kb on + strand, within AZOBR_RS08500at 1783.383 kb on - strand, within AZOBR_RS08500at 1783.517 kb on + strand, within AZOBR_RS08500at 1783.517 kb on + strand, within AZOBR_RS08500at 1783.517 kb on + strand, within AZOBR_RS08500at 1783.517 kb on + strand, within AZOBR_RS08500at 1783.518 kb on - strand, within AZOBR_RS08500at 1783.518 kb on - strand, within AZOBR_RS08500at 1783.518 kb on - strand, within AZOBR_RS08500at 1783.718 kb on + strand, within AZOBR_RS08500at 1783.719 kb on - strand, within AZOBR_RS08500at 1783.907 kb on + strandat 1783.907 kb on + strandat 1783.908 kb on - strandat 1784.060 kb on + strand, within AZOBR_RS08505at 1784.061 kb on - strand, within AZOBR_RS08505at 1784.189 kb on + strand, within AZOBR_RS08505at 1784.189 kb on + strand, within AZOBR_RS08505at 1784.189 kb on + strand, within AZOBR_RS08505at 1784.190 kb on - strand, within AZOBR_RS08505at 1784.190 kb on - strand, within AZOBR_RS08505at 1784.379 kb on - strandat 1784.465 kb on + strand, within AZOBR_RS08505at 1784.844 kb on + strand, within AZOBR_RS08510at 1784.845 kb on - strand, within AZOBR_RS08510at 1784.869 kb on - strand, within AZOBR_RS08510at 1785.076 kb on - strand, within AZOBR_RS08510at 1785.450 kb on + strand, within AZOBR_RS08510at 1785.450 kb on + strand, within AZOBR_RS08510at 1785.451 kb on - strand, within AZOBR_RS08510at 1785.451 kb on - strand, within AZOBR_RS08510

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml
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1,782,977 + AZOBR_RS08500 0.12 -2.6
1,782,977 + AZOBR_RS08500 0.12 +0.1
1,783,005 - AZOBR_RS08500 0.15 -0.9
1,783,106 + AZOBR_RS08500 0.25 +0.4
1,783,106 + AZOBR_RS08500 0.25 +0.5
1,783,107 - AZOBR_RS08500 0.25 +2.6
1,783,107 - AZOBR_RS08500 0.25 +0.8
1,783,107 - AZOBR_RS08500 0.25 +0.6
1,783,232 + AZOBR_RS08500 0.38 -4.9
1,783,232 + AZOBR_RS08500 0.38 +1.4
1,783,232 + AZOBR_RS08500 0.38 +0.3
1,783,232 + AZOBR_RS08500 0.38 +0.2
1,783,379 + AZOBR_RS08500 0.53 -0.5
1,783,379 + AZOBR_RS08500 0.53 +1.4
1,783,379 + AZOBR_RS08500 0.53 -3.8
1,783,379 + AZOBR_RS08500 0.53 +0.8
1,783,382 + AZOBR_RS08500 0.53 -2.1
1,783,382 + AZOBR_RS08500 0.53 +1.0
1,783,383 - AZOBR_RS08500 0.53 +0.5
1,783,517 + AZOBR_RS08500 0.67 +1.1
1,783,517 + AZOBR_RS08500 0.67 +1.5
1,783,517 + AZOBR_RS08500 0.67 +0.1
1,783,517 + AZOBR_RS08500 0.67 -0.0
1,783,518 - AZOBR_RS08500 0.67 +0.9
1,783,518 - AZOBR_RS08500 0.67 +0.1
1,783,518 - AZOBR_RS08500 0.67 +0.4
1,783,718 + AZOBR_RS08500 0.87 +0.4
1,783,719 - AZOBR_RS08500 0.87 -1.0
1,783,907 + +0.9
1,783,907 + -2.7
1,783,908 - +1.2
1,784,060 + AZOBR_RS08505 0.26 +0.4
1,784,061 - AZOBR_RS08505 0.26 +0.9
1,784,189 + AZOBR_RS08505 0.45 +1.5
1,784,189 + AZOBR_RS08505 0.45 -0.0
1,784,189 + AZOBR_RS08505 0.45 -0.1
1,784,190 - AZOBR_RS08505 0.45 +0.9
1,784,190 - AZOBR_RS08505 0.45 -0.4
1,784,379 - +2.2
1,784,465 + AZOBR_RS08505 0.86 +1.2
1,784,844 + AZOBR_RS08510 0.21 -0.1
1,784,845 - AZOBR_RS08510 0.21 +1.1
1,784,869 - AZOBR_RS08510 0.23 -0.2
1,785,076 - AZOBR_RS08510 0.41 +0.5
1,785,450 + AZOBR_RS08510 0.75 -0.5
1,785,450 + AZOBR_RS08510 0.75 +2.6
1,785,451 - AZOBR_RS08510 0.75 +0.1
1,785,451 - AZOBR_RS08510 0.75 +0.0

Or see this region's nucleotide sequence