Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS08490 and AZOBR_RS08500 are separated by 987 nucleotides AZOBR_RS08500 and AZOBR_RS08505 are separated by 39 nucleotides AZOBR_RS08505 and AZOBR_RS08510 are separated by 51 nucleotides
AZOBR_RS08490: AZOBR_RS08490 - hypothetical protein, at 1,781,654 to 1,781,872
_RS08490
AZOBR_RS08500: AZOBR_RS08500 - ABC transporter permease, at 1,782,860 to 1,783,843
_RS08500
AZOBR_RS08505: AZOBR_RS08505 - hypothetical protein, at 1,783,883 to 1,784,560
_RS08505
AZOBR_RS08510: AZOBR_RS08510 - alanine dehydrogenase, at 1,784,612 to 1,785,730
_RS08510
Position (kb) 1782
1783
1784 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 1782.042 kb on + strand at 1782.117 kb on + strand at 1782.117 kb on + strand at 1782.117 kb on + strand at 1782.253 kb on - strand at 1782.330 kb on + strand at 1782.330 kb on + strand at 1782.331 kb on - strand at 1782.627 kb on - strand at 1782.627 kb on - strand at 1782.627 kb on - strand at 1782.729 kb on - strand at 1782.768 kb on - strand at 1782.977 kb on + strand, within AZOBR_RS08500 at 1782.977 kb on + strand, within AZOBR_RS08500 at 1783.005 kb on - strand, within AZOBR_RS08500 at 1783.106 kb on + strand, within AZOBR_RS08500 at 1783.106 kb on + strand, within AZOBR_RS08500 at 1783.107 kb on - strand, within AZOBR_RS08500 at 1783.107 kb on - strand, within AZOBR_RS08500 at 1783.107 kb on - strand, within AZOBR_RS08500 at 1783.232 kb on + strand, within AZOBR_RS08500 at 1783.232 kb on + strand, within AZOBR_RS08500 at 1783.232 kb on + strand, within AZOBR_RS08500 at 1783.232 kb on + strand, within AZOBR_RS08500 at 1783.379 kb on + strand, within AZOBR_RS08500 at 1783.379 kb on + strand, within AZOBR_RS08500 at 1783.379 kb on + strand, within AZOBR_RS08500 at 1783.379 kb on + strand, within AZOBR_RS08500 at 1783.382 kb on + strand, within AZOBR_RS08500 at 1783.382 kb on + strand, within AZOBR_RS08500 at 1783.383 kb on - strand, within AZOBR_RS08500 at 1783.517 kb on + strand, within AZOBR_RS08500 at 1783.517 kb on + strand, within AZOBR_RS08500 at 1783.517 kb on + strand, within AZOBR_RS08500 at 1783.517 kb on + strand, within AZOBR_RS08500 at 1783.518 kb on - strand, within AZOBR_RS08500 at 1783.518 kb on - strand, within AZOBR_RS08500 at 1783.518 kb on - strand, within AZOBR_RS08500 at 1783.718 kb on + strand, within AZOBR_RS08500 at 1783.719 kb on - strand, within AZOBR_RS08500 at 1783.907 kb on + strand at 1783.907 kb on + strand at 1783.908 kb on - strand at 1784.060 kb on + strand, within AZOBR_RS08505 at 1784.061 kb on - strand, within AZOBR_RS08505 at 1784.189 kb on + strand, within AZOBR_RS08505 at 1784.189 kb on + strand, within AZOBR_RS08505 at 1784.189 kb on + strand, within AZOBR_RS08505 at 1784.190 kb on - strand, within AZOBR_RS08505 at 1784.190 kb on - strand, within AZOBR_RS08505 at 1784.379 kb on - strand at 1784.465 kb on + strand, within AZOBR_RS08505
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 1,782,042 + +0.7 1,782,117 + +0.2 1,782,117 + +1.5 1,782,117 + -0.8 1,782,253 - -0.5 1,782,330 + -0.1 1,782,330 + -1.7 1,782,331 - +1.1 1,782,627 - +0.1 1,782,627 - -3.2 1,782,627 - -0.1 1,782,729 - +0.3 1,782,768 - -1.1 1,782,977 + AZOBR_RS08500 0.12 -2.6 1,782,977 + AZOBR_RS08500 0.12 +0.1 1,783,005 - AZOBR_RS08500 0.15 -0.9 1,783,106 + AZOBR_RS08500 0.25 +0.4 1,783,106 + AZOBR_RS08500 0.25 +0.5 1,783,107 - AZOBR_RS08500 0.25 +2.6 1,783,107 - AZOBR_RS08500 0.25 +0.8 1,783,107 - AZOBR_RS08500 0.25 +0.6 1,783,232 + AZOBR_RS08500 0.38 -4.9 1,783,232 + AZOBR_RS08500 0.38 +1.4 1,783,232 + AZOBR_RS08500 0.38 +0.3 1,783,232 + AZOBR_RS08500 0.38 +0.2 1,783,379 + AZOBR_RS08500 0.53 -0.5 1,783,379 + AZOBR_RS08500 0.53 +1.4 1,783,379 + AZOBR_RS08500 0.53 -3.8 1,783,379 + AZOBR_RS08500 0.53 +0.8 1,783,382 + AZOBR_RS08500 0.53 -2.1 1,783,382 + AZOBR_RS08500 0.53 +1.0 1,783,383 - AZOBR_RS08500 0.53 +0.5 1,783,517 + AZOBR_RS08500 0.67 +1.1 1,783,517 + AZOBR_RS08500 0.67 +1.5 1,783,517 + AZOBR_RS08500 0.67 +0.1 1,783,517 + AZOBR_RS08500 0.67 -0.0 1,783,518 - AZOBR_RS08500 0.67 +0.9 1,783,518 - AZOBR_RS08500 0.67 +0.1 1,783,518 - AZOBR_RS08500 0.67 +0.4 1,783,718 + AZOBR_RS08500 0.87 +0.4 1,783,719 - AZOBR_RS08500 0.87 -1.0 1,783,907 + +0.9 1,783,907 + -2.7 1,783,908 - +1.2 1,784,060 + AZOBR_RS08505 0.26 +0.4 1,784,061 - AZOBR_RS08505 0.26 +0.9 1,784,189 + AZOBR_RS08505 0.45 +1.5 1,784,189 + AZOBR_RS08505 0.45 -0.0 1,784,189 + AZOBR_RS08505 0.45 -0.1 1,784,190 - AZOBR_RS08505 0.45 +0.9 1,784,190 - AZOBR_RS08505 0.45 -0.4 1,784,379 - +2.2 1,784,465 + AZOBR_RS08505 0.86 +1.2
Or see this region's nucleotide sequence