Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS07900

Experiment: D-Cycloserine 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS07890 and AZOBR_RS07895 are separated by 200 nucleotidesAZOBR_RS07895 and AZOBR_RS07900 are separated by 260 nucleotidesAZOBR_RS07900 and AZOBR_RS07905 are separated by 99 nucleotidesAZOBR_RS07905 and AZOBR_RS07910 are separated by 258 nucleotides AZOBR_RS07890: AZOBR_RS07890 - acetoin utilization protein, at 1,662,882 to 1,663,811 _RS07890 AZOBR_RS07895: AZOBR_RS07895 - GCN5 family acetyltransferase, at 1,664,012 to 1,664,437 _RS07895 AZOBR_RS07900: AZOBR_RS07900 - 2-dehydropantoate 2-reductase, at 1,664,698 to 1,665,723 _RS07900 AZOBR_RS07905: AZOBR_RS07905 - histidine kinase, at 1,665,823 to 1,666,278 _RS07905 AZOBR_RS07910: AZOBR_RS07910 - NAD(P) transhydrogenase subunit alpha, at 1,666,537 to 1,667,727 _RS07910 Position (kb) 1664 1665 1666Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1663.749 kb on + strandat 1663.870 kb on - strandat 1663.870 kb on - strandat 1663.960 kb on - strandat 1664.057 kb on + strand, within AZOBR_RS07895at 1664.058 kb on - strand, within AZOBR_RS07895at 1664.058 kb on - strand, within AZOBR_RS07895at 1664.058 kb on - strand, within AZOBR_RS07895at 1664.058 kb on - strand, within AZOBR_RS07895at 1664.058 kb on - strand, within AZOBR_RS07895at 1664.106 kb on - strand, within AZOBR_RS07895at 1664.141 kb on + strand, within AZOBR_RS07895at 1664.141 kb on + strand, within AZOBR_RS07895at 1664.142 kb on - strand, within AZOBR_RS07895at 1664.225 kb on + strand, within AZOBR_RS07895at 1664.225 kb on + strand, within AZOBR_RS07895at 1664.226 kb on - strand, within AZOBR_RS07895at 1664.227 kb on + strand, within AZOBR_RS07895at 1664.227 kb on + strand, within AZOBR_RS07895at 1664.227 kb on + strand, within AZOBR_RS07895at 1664.227 kb on + strand, within AZOBR_RS07895at 1664.227 kb on + strand, within AZOBR_RS07895at 1664.227 kb on + strand, within AZOBR_RS07895at 1664.227 kb on + strand, within AZOBR_RS07895at 1664.227 kb on + strand, within AZOBR_RS07895at 1664.227 kb on + strand, within AZOBR_RS07895at 1664.227 kb on + strand, within AZOBR_RS07895at 1664.227 kb on + strand, within AZOBR_RS07895at 1664.227 kb on + strand, within AZOBR_RS07895at 1664.228 kb on - strand, within AZOBR_RS07895at 1664.228 kb on - strand, within AZOBR_RS07895at 1664.228 kb on - strand, within AZOBR_RS07895at 1664.228 kb on - strand, within AZOBR_RS07895at 1664.228 kb on - strand, within AZOBR_RS07895at 1664.228 kb on - strand, within AZOBR_RS07895at 1664.228 kb on - strand, within AZOBR_RS07895at 1664.228 kb on - strand, within AZOBR_RS07895at 1664.228 kb on - strand, within AZOBR_RS07895at 1664.231 kb on + strand, within AZOBR_RS07895at 1664.231 kb on + strand, within AZOBR_RS07895at 1664.231 kb on + strand, within AZOBR_RS07895at 1664.231 kb on + strand, within AZOBR_RS07895at 1664.231 kb on + strand, within AZOBR_RS07895at 1664.231 kb on + strand, within AZOBR_RS07895at 1664.231 kb on + strand, within AZOBR_RS07895at 1664.231 kb on + strand, within AZOBR_RS07895at 1664.231 kb on + strand, within AZOBR_RS07895at 1664.231 kb on + strand, within AZOBR_RS07895at 1664.231 kb on + strand, within AZOBR_RS07895at 1664.231 kb on + strand, within AZOBR_RS07895at 1664.232 kb on - strand, within AZOBR_RS07895at 1664.232 kb on - strand, within AZOBR_RS07895at 1664.232 kb on - strand, within AZOBR_RS07895at 1664.232 kb on - strand, within AZOBR_RS07895at 1664.232 kb on - strand, within AZOBR_RS07895at 1664.232 kb on - strand, within AZOBR_RS07895at 1664.232 kb on - strand, within AZOBR_RS07895at 1664.232 kb on - strand, within AZOBR_RS07895at 1664.232 kb on - strand, within AZOBR_RS07895at 1664.232 kb on - strand, within AZOBR_RS07895at 1664.382 kb on - strand, within AZOBR_RS07895at 1664.697 kb on + strandat 1664.905 kb on + strand, within AZOBR_RS07900at 1664.906 kb on - strand, within AZOBR_RS07900at 1664.906 kb on - strand, within AZOBR_RS07900at 1664.906 kb on - strand, within AZOBR_RS07900at 1665.019 kb on + strand, within AZOBR_RS07900at 1665.019 kb on + strand, within AZOBR_RS07900at 1665.020 kb on - strand, within AZOBR_RS07900at 1665.025 kb on + strand, within AZOBR_RS07900at 1665.026 kb on - strand, within AZOBR_RS07900at 1665.130 kb on + strand, within AZOBR_RS07900at 1665.131 kb on - strand, within AZOBR_RS07900at 1665.175 kb on + strand, within AZOBR_RS07900at 1665.176 kb on - strand, within AZOBR_RS07900at 1665.176 kb on - strand, within AZOBR_RS07900at 1665.667 kb on + strandat 1665.668 kb on - strandat 1665.668 kb on - strandat 1665.668 kb on - strandat 1665.721 kb on + strandat 1665.721 kb on + strandat 1666.038 kb on - strand, within AZOBR_RS07905at 1666.038 kb on - strand, within AZOBR_RS07905at 1666.684 kb on + strand, within AZOBR_RS07910at 1666.684 kb on + strand, within AZOBR_RS07910at 1666.685 kb on - strand, within AZOBR_RS07910

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml
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1,663,749 + -2.0
1,663,870 - +0.3
1,663,870 - -0.3
1,663,960 - -0.3
1,664,057 + AZOBR_RS07895 0.11 -1.8
1,664,058 - AZOBR_RS07895 0.11 -2.4
1,664,058 - AZOBR_RS07895 0.11 -0.3
1,664,058 - AZOBR_RS07895 0.11 -1.5
1,664,058 - AZOBR_RS07895 0.11 +2.2
1,664,058 - AZOBR_RS07895 0.11 +1.2
1,664,106 - AZOBR_RS07895 0.22 +0.2
1,664,141 + AZOBR_RS07895 0.30 -0.6
1,664,141 + AZOBR_RS07895 0.30 -4.2
1,664,142 - AZOBR_RS07895 0.31 -0.2
1,664,225 + AZOBR_RS07895 0.50 -1.2
1,664,225 + AZOBR_RS07895 0.50 +0.8
1,664,226 - AZOBR_RS07895 0.50 -0.7
1,664,227 + AZOBR_RS07895 0.50 -2.7
1,664,227 + AZOBR_RS07895 0.50 +0.3
1,664,227 + AZOBR_RS07895 0.50 -0.5
1,664,227 + AZOBR_RS07895 0.50 +0.0
1,664,227 + AZOBR_RS07895 0.50 -2.6
1,664,227 + AZOBR_RS07895 0.50 -3.1
1,664,227 + AZOBR_RS07895 0.50 -0.8
1,664,227 + AZOBR_RS07895 0.50 -0.1
1,664,227 + AZOBR_RS07895 0.50 +0.4
1,664,227 + AZOBR_RS07895 0.50 +0.7
1,664,227 + AZOBR_RS07895 0.50 -3.2
1,664,227 + AZOBR_RS07895 0.50 +0.2
1,664,228 - AZOBR_RS07895 0.51 +0.6
1,664,228 - AZOBR_RS07895 0.51 +0.0
1,664,228 - AZOBR_RS07895 0.51 +0.1
1,664,228 - AZOBR_RS07895 0.51 -0.4
1,664,228 - AZOBR_RS07895 0.51 -0.3
1,664,228 - AZOBR_RS07895 0.51 +0.7
1,664,228 - AZOBR_RS07895 0.51 -3.5
1,664,228 - AZOBR_RS07895 0.51 +0.7
1,664,228 - AZOBR_RS07895 0.51 +0.3
1,664,231 + AZOBR_RS07895 0.51 -3.0
1,664,231 + AZOBR_RS07895 0.51 -0.2
1,664,231 + AZOBR_RS07895 0.51 +0.7
1,664,231 + AZOBR_RS07895 0.51 +2.2
1,664,231 + AZOBR_RS07895 0.51 -4.1
1,664,231 + AZOBR_RS07895 0.51 +0.5
1,664,231 + AZOBR_RS07895 0.51 +0.2
1,664,231 + AZOBR_RS07895 0.51 -3.9
1,664,231 + AZOBR_RS07895 0.51 -3.0
1,664,231 + AZOBR_RS07895 0.51 -2.7
1,664,231 + AZOBR_RS07895 0.51 -0.4
1,664,231 + AZOBR_RS07895 0.51 +0.7
1,664,232 - AZOBR_RS07895 0.52 +0.4
1,664,232 - AZOBR_RS07895 0.52 -0.8
1,664,232 - AZOBR_RS07895 0.52 +0.1
1,664,232 - AZOBR_RS07895 0.52 -0.1
1,664,232 - AZOBR_RS07895 0.52 -1.1
1,664,232 - AZOBR_RS07895 0.52 +0.1
1,664,232 - AZOBR_RS07895 0.52 +0.9
1,664,232 - AZOBR_RS07895 0.52 +0.8
1,664,232 - AZOBR_RS07895 0.52 -3.7
1,664,232 - AZOBR_RS07895 0.52 +0.9
1,664,382 - AZOBR_RS07895 0.87 +1.0
1,664,697 + -0.8
1,664,905 + AZOBR_RS07900 0.20 -0.1
1,664,906 - AZOBR_RS07900 0.20 -0.1
1,664,906 - AZOBR_RS07900 0.20 -1.5
1,664,906 - AZOBR_RS07900 0.20 -0.1
1,665,019 + AZOBR_RS07900 0.31 -0.4
1,665,019 + AZOBR_RS07900 0.31 -2.9
1,665,020 - AZOBR_RS07900 0.31 -3.8
1,665,025 + AZOBR_RS07900 0.32 +0.0
1,665,026 - AZOBR_RS07900 0.32 -1.0
1,665,130 + AZOBR_RS07900 0.42 -1.5
1,665,131 - AZOBR_RS07900 0.42 +1.1
1,665,175 + AZOBR_RS07900 0.46 -2.6
1,665,176 - AZOBR_RS07900 0.47 -0.8
1,665,176 - AZOBR_RS07900 0.47 +1.0
1,665,667 + -2.0
1,665,668 - -1.6
1,665,668 - +0.4
1,665,668 - -0.5
1,665,721 + +0.4
1,665,721 + +0.8
1,666,038 - AZOBR_RS07905 0.47 -0.8
1,666,038 - AZOBR_RS07905 0.47 -0.3
1,666,684 + AZOBR_RS07910 0.12 -0.0
1,666,684 + AZOBR_RS07910 0.12 +0.5
1,666,685 - AZOBR_RS07910 0.12 -0.0

Or see this region's nucleotide sequence