Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS07040 and AZOBR_RS07045 are separated by 56 nucleotides AZOBR_RS07045 and AZOBR_RS07050 are separated by 27 nucleotides AZOBR_RS07050 and AZOBR_RS07055 are separated by 180 nucleotides AZOBR_RS07055 and AZOBR_RS07060 are separated by 144 nucleotides
AZOBR_RS07040: AZOBR_RS07040 - phosphoglucosamine mutase, at 1,489,681 to 1,491,048
_RS07040
AZOBR_RS07045: AZOBR_RS07045 - phosphomethylpyrimidine kinase, at 1,491,105 to 1,491,905
_RS07045
AZOBR_RS07050: AZOBR_RS07050 - transcriptional regulator, at 1,491,933 to 1,493,327
_RS07050
AZOBR_RS07055: AZOBR_RS07055 - hypothetical protein, at 1,493,508 to 1,493,720
_RS07055
AZOBR_RS07060: AZOBR_RS07060 - hypothetical protein, at 1,493,865 to 1,494,188
_RS07060
Position (kb)
1491
1492
1493
1494 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1491.046 kb on + strand at 1491.046 kb on + strand at 1491.047 kb on - strand at 1491.903 kb on + strand at 1492.331 kb on - strand, within AZOBR_RS07050 at 1492.439 kb on - strand, within AZOBR_RS07050 at 1492.439 kb on - strand at 1492.612 kb on + strand, within AZOBR_RS07050 at 1492.613 kb on - strand, within AZOBR_RS07050 at 1492.735 kb on + strand, within AZOBR_RS07050 at 1492.736 kb on - strand, within AZOBR_RS07050 at 1492.736 kb on - strand, within AZOBR_RS07050 at 1492.922 kb on - strand, within AZOBR_RS07050 at 1493.539 kb on - strand, within AZOBR_RS07055 at 1493.539 kb on - strand, within AZOBR_RS07055 at 1493.539 kb on - strand, within AZOBR_RS07055 at 1493.775 kb on + strand at 1493.776 kb on - strand at 1493.776 kb on - strand at 1493.827 kb on - strand at 1493.844 kb on - strand at 1493.972 kb on - strand, within AZOBR_RS07060
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 1,491,046 + +0.1 1,491,046 + +0.1 1,491,047 - +0.7 1,491,903 + +0.2 1,492,331 - AZOBR_RS07050 0.29 -3.7 1,492,439 - AZOBR_RS07050 0.36 -0.2 1,492,439 - -0.1 1,492,612 + AZOBR_RS07050 0.49 -0.6 1,492,613 - AZOBR_RS07050 0.49 -1.1 1,492,735 + AZOBR_RS07050 0.57 +0.7 1,492,736 - AZOBR_RS07050 0.58 -3.4 1,492,736 - AZOBR_RS07050 0.58 +1.1 1,492,922 - AZOBR_RS07050 0.71 +1.0 1,493,539 - AZOBR_RS07055 0.15 +0.1 1,493,539 - AZOBR_RS07055 0.15 +0.1 1,493,539 - AZOBR_RS07055 0.15 -0.2 1,493,775 + -2.3 1,493,776 - -0.0 1,493,776 - +0.9 1,493,827 - +0.1 1,493,844 - +0.3 1,493,972 - AZOBR_RS07060 0.33 -1.7
Or see this region's nucleotide sequence