Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS06505

Experiment: D-Cycloserine 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS06500 and AZOBR_RS06505 overlap by 4 nucleotides AZOBR_RS06500: AZOBR_RS06500 - ABC transporter permease, at 1,375,619 to 1,376,518 _RS06500 AZOBR_RS06505: AZOBR_RS06505 - ABC transporter ATP-binding protein, at 1,376,515 to 1,377,312 _RS06505 Position (kb) 1376 1377 1378Strain fitness (log2 ratio) -2 -1 0 1at 1375.549 kb on + strandat 1375.549 kb on + strandat 1375.550 kb on - strandat 1375.665 kb on - strandat 1375.665 kb on - strandat 1375.688 kb on + strandat 1375.689 kb on - strandat 1375.689 kb on - strandat 1376.165 kb on + strand, within AZOBR_RS06500at 1376.364 kb on - strand, within AZOBR_RS06500at 1377.158 kb on - strand, within AZOBR_RS06505at 1377.158 kb on - strand, within AZOBR_RS06505at 1377.442 kb on - strandat 1377.792 kb on + strandat 1377.793 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml
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1,375,549 + -0.3
1,375,549 + -1.4
1,375,550 - +0.7
1,375,665 - -0.1
1,375,665 - -0.9
1,375,688 + +0.3
1,375,689 - -1.6
1,375,689 - -0.4
1,376,165 + AZOBR_RS06500 0.61 +0.3
1,376,364 - AZOBR_RS06500 0.83 +0.3
1,377,158 - AZOBR_RS06505 0.81 -2.5
1,377,158 - AZOBR_RS06505 0.81 -0.1
1,377,442 - +0.5
1,377,792 + +0.1
1,377,793 - +0.8

Or see this region's nucleotide sequence