Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS05125

Experiment: D-Cycloserine 0.125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAZOBR_RS05120 and AZOBR_RS05125 are separated by 542 nucleotidesAZOBR_RS05125 and AZOBR_RS05130 are separated by 128 nucleotidesAZOBR_RS05130 and AZOBR_RS05135 are separated by 198 nucleotides AZOBR_RS05120: AZOBR_RS05120 - hypothetical protein, at 1,086,053 to 1,086,544 _RS05120 AZOBR_RS05125: AZOBR_RS05125 - ribonucleotide-diphosphate reductase subunit alpha, at 1,087,087 to 1,090,806 _RS05125 AZOBR_RS05130: AZOBR_RS05130 - hypothetical protein, at 1,090,935 to 1,091,417 _RS05130 AZOBR_RS05135: AZOBR_RS05135 - septum formation initiator, at 1,091,616 to 1,093,247 _RS05135 Position (kb) 1087 1088 1089 1090 1091Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1086.099 kb on + strandat 1086.099 kb on + strandat 1086.842 kb on + strandat 1087.833 kb on + strand, within AZOBR_RS05125at 1091.086 kb on + strand, within AZOBR_RS05130at 1091.087 kb on - strand, within AZOBR_RS05130at 1091.087 kb on - strand, within AZOBR_RS05130at 1091.087 kb on - strand, within AZOBR_RS05130at 1091.234 kb on + strand, within AZOBR_RS05130at 1091.236 kb on + strand, within AZOBR_RS05130at 1091.237 kb on - strand, within AZOBR_RS05130at 1091.237 kb on - strand, within AZOBR_RS05130at 1091.264 kb on - strand, within AZOBR_RS05130at 1091.437 kb on - strandat 1091.461 kb on + strandat 1091.473 kb on + strandat 1091.473 kb on + strandat 1091.473 kb on + strandat 1091.474 kb on - strandat 1091.500 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml
remove
1,086,099 + -0.7
1,086,099 + +1.5
1,086,842 + +0.1
1,087,833 + AZOBR_RS05125 0.20 -3.4
1,091,086 + AZOBR_RS05130 0.31 +0.3
1,091,087 - AZOBR_RS05130 0.31 -0.0
1,091,087 - AZOBR_RS05130 0.31 +1.0
1,091,087 - AZOBR_RS05130 0.31 -2.2
1,091,234 + AZOBR_RS05130 0.62 -3.6
1,091,236 + AZOBR_RS05130 0.62 -0.1
1,091,237 - AZOBR_RS05130 0.63 +0.5
1,091,237 - AZOBR_RS05130 0.63 +0.8
1,091,264 - AZOBR_RS05130 0.68 +0.8
1,091,437 - -1.2
1,091,461 + +0.3
1,091,473 + +0.6
1,091,473 + -0.1
1,091,473 + +2.2
1,091,474 - +0.4
1,091,500 + +0.3

Or see this region's nucleotide sequence