Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS05045 and AZOBR_RS05050 are separated by 121 nucleotides AZOBR_RS05050 and AZOBR_RS05055 are separated by 119 nucleotides
AZOBR_RS05045: AZOBR_RS05045 - glucose-6-phosphate isomerase, at 1,069,429 to 1,071,072
_RS05045
AZOBR_RS05050: AZOBR_RS05050 - hypothetical protein, at 1,071,194 to 1,071,415
_RS05050
AZOBR_RS05055: AZOBR_RS05055 - zinc protease, at 1,071,535 to 1,072,899
_RS05055
Position (kb)
1071
1072 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1070.207 kb on + strand at 1070.208 kb on - strand at 1070.208 kb on - strand at 1070.658 kb on - strand, within AZOBR_RS05045 at 1071.107 kb on + strand at 1071.107 kb on + strand at 1071.169 kb on + strand at 1071.170 kb on - strand at 1071.170 kb on - strand at 1071.183 kb on + strand at 1071.184 kb on - strand at 1071.408 kb on + strand at 1071.409 kb on - strand at 1071.424 kb on - strand at 1071.782 kb on + strand, within AZOBR_RS05055 at 1071.782 kb on + strand, within AZOBR_RS05055 at 1071.783 kb on - strand, within AZOBR_RS05055 at 1071.783 kb on - strand, within AZOBR_RS05055 at 1071.935 kb on + strand, within AZOBR_RS05055 at 1071.935 kb on + strand, within AZOBR_RS05055 at 1071.936 kb on - strand, within AZOBR_RS05055 at 1071.936 kb on - strand, within AZOBR_RS05055 at 1071.941 kb on + strand, within AZOBR_RS05055 at 1071.942 kb on - strand, within AZOBR_RS05055 at 1071.951 kb on - strand, within AZOBR_RS05055 at 1072.019 kb on + strand, within AZOBR_RS05055 at 1072.019 kb on + strand, within AZOBR_RS05055 at 1072.019 kb on + strand, within AZOBR_RS05055 at 1072.020 kb on - strand, within AZOBR_RS05055 at 1072.349 kb on + strand, within AZOBR_RS05055 at 1072.376 kb on + strand, within AZOBR_RS05055 at 1072.397 kb on + strand, within AZOBR_RS05055 at 1072.397 kb on + strand, within AZOBR_RS05055 at 1072.398 kb on - strand, within AZOBR_RS05055
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 1,070,207 + +1.8 1,070,208 - +1.2 1,070,208 - +0.8 1,070,658 - AZOBR_RS05045 0.75 +1.4 1,071,107 + -1.6 1,071,107 + -1.0 1,071,169 + -1.5 1,071,170 - -0.1 1,071,170 - -1.6 1,071,183 + +0.1 1,071,184 - +1.8 1,071,408 + -0.8 1,071,409 - +0.6 1,071,424 - -0.4 1,071,782 + AZOBR_RS05055 0.18 -3.8 1,071,782 + AZOBR_RS05055 0.18 -0.1 1,071,783 - AZOBR_RS05055 0.18 +3.3 1,071,783 - AZOBR_RS05055 0.18 +0.0 1,071,935 + AZOBR_RS05055 0.29 -1.3 1,071,935 + AZOBR_RS05055 0.29 +0.6 1,071,936 - AZOBR_RS05055 0.29 +0.5 1,071,936 - AZOBR_RS05055 0.29 -4.3 1,071,941 + AZOBR_RS05055 0.30 -1.2 1,071,942 - AZOBR_RS05055 0.30 -3.4 1,071,951 - AZOBR_RS05055 0.30 -0.3 1,072,019 + AZOBR_RS05055 0.35 +0.7 1,072,019 + AZOBR_RS05055 0.35 -0.5 1,072,019 + AZOBR_RS05055 0.35 -1.4 1,072,020 - AZOBR_RS05055 0.36 -0.3 1,072,349 + AZOBR_RS05055 0.60 +0.4 1,072,376 + AZOBR_RS05055 0.62 -1.8 1,072,397 + AZOBR_RS05055 0.63 -2.2 1,072,397 + AZOBR_RS05055 0.63 -1.0 1,072,398 - AZOBR_RS05055 0.63 -0.7
Or see this region's nucleotide sequence