Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS04715 and AZOBR_RS04720 overlap by 4 nucleotides AZOBR_RS04720 and AZOBR_RS04725 overlap by 4 nucleotides AZOBR_RS04725 and AZOBR_RS04730 are separated by 53 nucleotides
AZOBR_RS04715: AZOBR_RS04715 - putative RND superfamily drug exporter, at 992,379 to 994,715
_RS04715
AZOBR_RS04720: AZOBR_RS04720 - conserved exported protein of unknown function, at 994,712 to 995,329
_RS04720
AZOBR_RS04725: AZOBR_RS04725 - thioesterase, at 995,326 to 995,733
_RS04725
AZOBR_RS04730: AZOBR_RS04730 - hypothetical protein, at 995,787 to 997,193
_RS04730
Position (kb) 994
995
996 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 993.757 kb on + strand, within AZOBR_RS04715 at 993.769 kb on + strand, within AZOBR_RS04715 at 993.770 kb on - strand, within AZOBR_RS04715 at 993.936 kb on + strand, within AZOBR_RS04715 at 993.936 kb on + strand, within AZOBR_RS04715 at 993.936 kb on + strand, within AZOBR_RS04715 at 993.937 kb on - strand, within AZOBR_RS04715 at 993.937 kb on - strand, within AZOBR_RS04715 at 994.387 kb on + strand, within AZOBR_RS04715 at 994.388 kb on - strand, within AZOBR_RS04715 at 994.388 kb on - strand, within AZOBR_RS04715 at 994.388 kb on - strand, within AZOBR_RS04715 at 994.388 kb on - strand, within AZOBR_RS04715 at 994.388 kb on - strand, within AZOBR_RS04715 at 994.388 kb on - strand, within AZOBR_RS04715 at 994.388 kb on - strand, within AZOBR_RS04715 at 994.661 kb on - strand at 995.008 kb on - strand, within AZOBR_RS04720 at 995.463 kb on - strand, within AZOBR_RS04725 at 995.543 kb on + strand, within AZOBR_RS04725 at 995.544 kb on - strand, within AZOBR_RS04725 at 995.649 kb on - strand, within AZOBR_RS04725 at 995.649 kb on - strand, within AZOBR_RS04725 at 995.657 kb on + strand, within AZOBR_RS04725 at 995.658 kb on - strand, within AZOBR_RS04725 at 995.658 kb on - strand, within AZOBR_RS04725 at 995.658 kb on - strand, within AZOBR_RS04725 at 995.658 kb on - strand, within AZOBR_RS04725 at 995.658 kb on - strand, within AZOBR_RS04725 at 995.696 kb on + strand at 995.697 kb on - strand at 995.697 kb on - strand at 995.697 kb on - strand at 995.697 kb on - strand at 996.089 kb on + strand, within AZOBR_RS04730 at 996.090 kb on - strand, within AZOBR_RS04730 at 996.090 kb on - strand, within AZOBR_RS04730
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 993,757 + AZOBR_RS04715 0.59 +1.4 993,769 + AZOBR_RS04715 0.59 +0.1 993,770 - AZOBR_RS04715 0.60 -0.2 993,936 + AZOBR_RS04715 0.67 +2.1 993,936 + AZOBR_RS04715 0.67 +0.3 993,936 + AZOBR_RS04715 0.67 -1.7 993,937 - AZOBR_RS04715 0.67 -0.7 993,937 - AZOBR_RS04715 0.67 +0.8 994,387 + AZOBR_RS04715 0.86 -4.0 994,388 - AZOBR_RS04715 0.86 +0.6 994,388 - AZOBR_RS04715 0.86 +1.0 994,388 - AZOBR_RS04715 0.86 -2.4 994,388 - AZOBR_RS04715 0.86 -2.8 994,388 - AZOBR_RS04715 0.86 +0.2 994,388 - AZOBR_RS04715 0.86 -0.7 994,388 - AZOBR_RS04715 0.86 +0.2 994,661 - -0.2 995,008 - AZOBR_RS04720 0.48 -3.4 995,463 - AZOBR_RS04725 0.34 -0.5 995,543 + AZOBR_RS04725 0.53 -2.9 995,544 - AZOBR_RS04725 0.53 +2.8 995,649 - AZOBR_RS04725 0.79 -0.5 995,649 - AZOBR_RS04725 0.79 -3.7 995,657 + AZOBR_RS04725 0.81 +0.8 995,658 - AZOBR_RS04725 0.81 -0.5 995,658 - AZOBR_RS04725 0.81 +0.8 995,658 - AZOBR_RS04725 0.81 +0.2 995,658 - AZOBR_RS04725 0.81 -1.0 995,658 - AZOBR_RS04725 0.81 +0.5 995,696 + +0.0 995,697 - +1.1 995,697 - +0.4 995,697 - +0.8 995,697 - -1.1 996,089 + AZOBR_RS04730 0.21 +0.9 996,090 - AZOBR_RS04730 0.22 +0.8 996,090 - AZOBR_RS04730 0.22 -0.2
Or see this region's nucleotide sequence