Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS04710

Experiment: D-Cycloserine 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS04705 and AZOBR_RS04710 overlap by 4 nucleotidesAZOBR_RS04710 and AZOBR_RS04715 are separated by 401 nucleotides AZOBR_RS04705: AZOBR_RS04705 - 3-oxoacyl-ACP synthase, at 990,518 to 991,729 _RS04705 AZOBR_RS04710: AZOBR_RS04710 - hypothetical protein, at 991,726 to 991,977 _RS04710 AZOBR_RS04715: AZOBR_RS04715 - putative RND superfamily drug exporter, at 992,379 to 994,715 _RS04715 Position (kb) 991 992Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 990.891 kb on + strand, within AZOBR_RS04705at 991.171 kb on - strand, within AZOBR_RS04705at 991.273 kb on - strand, within AZOBR_RS04705at 991.273 kb on - strand, within AZOBR_RS04705at 991.341 kb on + strand, within AZOBR_RS04705at 991.533 kb on + strand, within AZOBR_RS04705at 991.533 kb on + strand, within AZOBR_RS04705at 991.534 kb on - strand, within AZOBR_RS04705at 991.534 kb on - strand, within AZOBR_RS04705at 991.775 kb on + strand, within AZOBR_RS04710at 991.775 kb on + strand, within AZOBR_RS04710at 991.797 kb on - strand, within AZOBR_RS04710at 991.952 kb on + strandat 991.952 kb on + strandat 992.317 kb on + strandat 992.317 kb on + strandat 992.318 kb on - strandat 992.365 kb on - strandat 992.371 kb on + strandat 992.617 kb on + strand, within AZOBR_RS04715at 992.831 kb on - strand, within AZOBR_RS04715

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml
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990,891 + AZOBR_RS04705 0.31 -2.3
991,171 - AZOBR_RS04705 0.54 +0.1
991,273 - AZOBR_RS04705 0.62 -0.5
991,273 - AZOBR_RS04705 0.62 -4.6
991,341 + AZOBR_RS04705 0.68 -1.5
991,533 + AZOBR_RS04705 0.84 -3.0
991,533 + AZOBR_RS04705 0.84 -1.7
991,534 - AZOBR_RS04705 0.84 +1.2
991,534 - AZOBR_RS04705 0.84 +0.3
991,775 + AZOBR_RS04710 0.19 -0.9
991,775 + AZOBR_RS04710 0.19 -0.1
991,797 - AZOBR_RS04710 0.28 -0.2
991,952 + +0.7
991,952 + -0.4
992,317 + -1.0
992,317 + +0.3
992,318 - +0.2
992,365 - -2.3
992,371 + -3.1
992,617 + AZOBR_RS04715 0.10 +1.2
992,831 - AZOBR_RS04715 0.19 +0.3

Or see this region's nucleotide sequence