Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS04660 and AZOBR_RS04665 are separated by 305 nucleotides AZOBR_RS04665 and AZOBR_RS04670 are separated by 373 nucleotides
AZOBR_RS04660: AZOBR_RS04660 - hypothetical protein, at 981,235 to 982,083
_RS04660
AZOBR_RS04665: AZOBR_RS04665 - hypothetical protein, at 982,389 to 983,135
_RS04665
AZOBR_RS04670: AZOBR_RS04670 - hypothetical protein, at 983,509 to 983,955
_RS04670
Position (kb) 982
983
984 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 981.556 kb on + strand, within AZOBR_RS04660 at 981.556 kb on + strand, within AZOBR_RS04660 at 981.556 kb on + strand, within AZOBR_RS04660 at 981.844 kb on + strand, within AZOBR_RS04660 at 982.621 kb on - strand at 982.632 kb on - strand, within AZOBR_RS04665 at 983.274 kb on - strand at 983.363 kb on + strand at 983.363 kb on + strand at 983.464 kb on - strand at 983.594 kb on - strand, within AZOBR_RS04670 at 983.642 kb on + strand, within AZOBR_RS04670 at 983.753 kb on + strand, within AZOBR_RS04670 at 983.754 kb on - strand, within AZOBR_RS04670 at 983.906 kb on + strand, within AZOBR_RS04670 at 983.906 kb on + strand, within AZOBR_RS04670 at 983.906 kb on + strand, within AZOBR_RS04670 at 983.907 kb on - strand, within AZOBR_RS04670 at 983.984 kb on + strand at 983.985 kb on - strand at 983.985 kb on - strand at 983.985 kb on - strand at 983.985 kb on - strand at 983.985 kb on - strand at 983.985 kb on - strand at 984.128 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 981,556 + AZOBR_RS04660 0.38 -0.4 981,556 + AZOBR_RS04660 0.38 +0.5 981,556 + AZOBR_RS04660 0.38 -0.4 981,844 + AZOBR_RS04660 0.72 +0.6 982,621 - +2.8 982,632 - AZOBR_RS04665 0.33 -0.4 983,274 - -2.5 983,363 + +0.9 983,363 + +0.1 983,464 - +0.9 983,594 - AZOBR_RS04670 0.19 +1.0 983,642 + AZOBR_RS04670 0.30 +0.5 983,753 + AZOBR_RS04670 0.55 +0.2 983,754 - AZOBR_RS04670 0.55 -0.1 983,906 + AZOBR_RS04670 0.89 +0.6 983,906 + AZOBR_RS04670 0.89 -0.2 983,906 + AZOBR_RS04670 0.89 +1.8 983,907 - AZOBR_RS04670 0.89 -2.5 983,984 + -1.2 983,985 - +2.0 983,985 - -2.4 983,985 - +0.4 983,985 - +0.7 983,985 - -0.5 983,985 - +0.7 984,128 + -0.2
Or see this region's nucleotide sequence