Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS04155 and AZOBR_RS04160 are separated by 19 nucleotides AZOBR_RS04160 and AZOBR_RS04165 are separated by 20 nucleotides AZOBR_RS04165 and AZOBR_RS04170 are separated by 22 nucleotides
AZOBR_RS04155: AZOBR_RS04155 - radical SAM protein, at 872,145 to 872,840
_RS04155
AZOBR_RS04160: AZOBR_RS04160 - 6-pyruvoyl tetrahydropterin synthase, at 872,860 to 873,405
_RS04160
AZOBR_RS04165: AZOBR_RS04165 - ABC transporter permease, at 873,426 to 874,340
_RS04165
AZOBR_RS04170: AZOBR_RS04170 - ABC transporter substrate-binding protein, at 874,363 to 875,529
_RS04170
Position (kb) 873
874
875 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 872.601 kb on + strand, within AZOBR_RS04155 at 872.601 kb on + strand, within AZOBR_RS04155 at 872.601 kb on + strand, within AZOBR_RS04155 at 872.601 kb on + strand, within AZOBR_RS04155 at 872.601 kb on + strand, within AZOBR_RS04155 at 872.602 kb on - strand, within AZOBR_RS04155 at 872.862 kb on - strand at 873.416 kb on + strand at 873.417 kb on - strand at 873.417 kb on - strand at 873.484 kb on + strand at 873.484 kb on + strand at 873.484 kb on + strand at 873.485 kb on - strand at 874.076 kb on - strand, within AZOBR_RS04165 at 874.207 kb on + strand, within AZOBR_RS04165 at 874.207 kb on + strand, within AZOBR_RS04165 at 874.207 kb on + strand, within AZOBR_RS04165 at 874.208 kb on - strand, within AZOBR_RS04165 at 874.208 kb on - strand, within AZOBR_RS04165 at 874.208 kb on - strand, within AZOBR_RS04165 at 874.208 kb on - strand, within AZOBR_RS04165 at 874.208 kb on - strand, within AZOBR_RS04165 at 874.388 kb on + strand at 874.388 kb on + strand at 874.472 kb on + strand at 874.472 kb on + strand at 874.472 kb on + strand at 874.472 kb on + strand at 874.472 kb on + strand at 874.472 kb on + strand at 874.472 kb on + strand at 874.473 kb on - strand at 874.473 kb on - strand at 874.473 kb on - strand at 874.628 kb on + strand, within AZOBR_RS04170 at 874.629 kb on - strand, within AZOBR_RS04170 at 874.643 kb on + strand, within AZOBR_RS04170 at 874.643 kb on + strand, within AZOBR_RS04170 at 874.643 kb on + strand, within AZOBR_RS04170 at 874.643 kb on + strand, within AZOBR_RS04170 at 874.643 kb on + strand, within AZOBR_RS04170 at 874.643 kb on + strand, within AZOBR_RS04170 at 874.644 kb on - strand, within AZOBR_RS04170 at 874.644 kb on - strand, within AZOBR_RS04170 at 874.664 kb on + strand, within AZOBR_RS04170 at 874.665 kb on - strand, within AZOBR_RS04170 at 874.665 kb on - strand, within AZOBR_RS04170 at 874.842 kb on - strand, within AZOBR_RS04170 at 874.842 kb on - strand, within AZOBR_RS04170 at 874.878 kb on - strand, within AZOBR_RS04170 at 874.887 kb on - strand, within AZOBR_RS04170 at 874.887 kb on - strand, within AZOBR_RS04170 at 874.934 kb on + strand, within AZOBR_RS04170 at 874.934 kb on + strand, within AZOBR_RS04170 at 874.959 kb on - strand, within AZOBR_RS04170 at 874.985 kb on + strand, within AZOBR_RS04170 at 874.985 kb on + strand, within AZOBR_RS04170 at 874.986 kb on - strand, within AZOBR_RS04170 at 874.986 kb on - strand, within AZOBR_RS04170 at 874.986 kb on - strand, within AZOBR_RS04170 at 874.988 kb on + strand, within AZOBR_RS04170 at 875.046 kb on - strand, within AZOBR_RS04170 at 875.129 kb on + strand, within AZOBR_RS04170 at 875.130 kb on - strand, within AZOBR_RS04170 at 875.130 kb on - strand, within AZOBR_RS04170
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 872,601 + AZOBR_RS04155 0.66 -0.2 872,601 + AZOBR_RS04155 0.66 +0.5 872,601 + AZOBR_RS04155 0.66 +0.5 872,601 + AZOBR_RS04155 0.66 -1.2 872,601 + AZOBR_RS04155 0.66 -3.0 872,602 - AZOBR_RS04155 0.66 +0.6 872,862 - -1.2 873,416 + -3.1 873,417 - +0.2 873,417 - +2.4 873,484 + +0.9 873,484 + -1.1 873,484 + +0.3 873,485 - +0.4 874,076 - AZOBR_RS04165 0.71 +0.1 874,207 + AZOBR_RS04165 0.85 -2.5 874,207 + AZOBR_RS04165 0.85 +0.4 874,207 + AZOBR_RS04165 0.85 -0.6 874,208 - AZOBR_RS04165 0.85 +1.0 874,208 - AZOBR_RS04165 0.85 +0.3 874,208 - AZOBR_RS04165 0.85 +0.4 874,208 - AZOBR_RS04165 0.85 -0.7 874,208 - AZOBR_RS04165 0.85 -1.8 874,388 + -0.1 874,388 + +0.7 874,472 + -0.3 874,472 + -1.8 874,472 + +0.7 874,472 + +0.4 874,472 + -1.2 874,472 + +0.9 874,472 + -0.3 874,473 - +0.7 874,473 - +1.8 874,473 - +2.9 874,628 + AZOBR_RS04170 0.23 +0.3 874,629 - AZOBR_RS04170 0.23 +0.4 874,643 + AZOBR_RS04170 0.24 -0.4 874,643 + AZOBR_RS04170 0.24 +0.4 874,643 + AZOBR_RS04170 0.24 -0.9 874,643 + AZOBR_RS04170 0.24 +0.0 874,643 + AZOBR_RS04170 0.24 -0.7 874,643 + AZOBR_RS04170 0.24 -0.4 874,644 - AZOBR_RS04170 0.24 -0.3 874,644 - AZOBR_RS04170 0.24 +0.3 874,664 + AZOBR_RS04170 0.26 -0.5 874,665 - AZOBR_RS04170 0.26 +0.9 874,665 - AZOBR_RS04170 0.26 +0.4 874,842 - AZOBR_RS04170 0.41 +0.1 874,842 - AZOBR_RS04170 0.41 +0.8 874,878 - AZOBR_RS04170 0.44 +1.0 874,887 - AZOBR_RS04170 0.45 +0.1 874,887 - AZOBR_RS04170 0.45 -3.8 874,934 + AZOBR_RS04170 0.49 +0.2 874,934 + AZOBR_RS04170 0.49 +3.1 874,959 - AZOBR_RS04170 0.51 -0.7 874,985 + AZOBR_RS04170 0.53 -0.0 874,985 + AZOBR_RS04170 0.53 +1.1 874,986 - AZOBR_RS04170 0.53 +0.3 874,986 - AZOBR_RS04170 0.53 -3.4 874,986 - AZOBR_RS04170 0.53 -2.3 874,988 + AZOBR_RS04170 0.54 +1.7 875,046 - AZOBR_RS04170 0.59 +0.2 875,129 + AZOBR_RS04170 0.66 -3.7 875,130 - AZOBR_RS04170 0.66 +0.3 875,130 - AZOBR_RS04170 0.66 -0.5
Or see this region's nucleotide sequence