Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS03890 and AZOBR_RS03895 are separated by 95 nucleotides AZOBR_RS03895 and AZOBR_RS03900 are separated by 11 nucleotides AZOBR_RS03900 and AZOBR_RS03905 are separated by 1 nucleotides
AZOBR_RS03890: AZOBR_RS03890 - methyltransferase UbiE, at 821,119 to 822,225
_RS03890
AZOBR_RS03895: AZOBR_RS03895 - hypothetical protein, at 822,321 to 823,928
_RS03895
AZOBR_RS03900: AZOBR_RS03900 - plasmid partitioning protein ParA, at 823,940 to 824,563
_RS03900
AZOBR_RS03905: AZOBR_RS03905 - hypothetical protein, at 824,565 to 825,953
_RS03905
Position (kb) 822
823
824 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 821.386 kb on + strand, within AZOBR_RS03890 at 821.390 kb on - strand, within AZOBR_RS03890 at 821.548 kb on + strand, within AZOBR_RS03890 at 821.548 kb on + strand, within AZOBR_RS03890 at 821.548 kb on + strand, within AZOBR_RS03890 at 821.548 kb on + strand, within AZOBR_RS03890 at 821.548 kb on + strand, within AZOBR_RS03890 at 821.819 kb on - strand, within AZOBR_RS03890 at 821.819 kb on - strand, within AZOBR_RS03890 at 821.935 kb on + strand, within AZOBR_RS03890 at 821.935 kb on + strand, within AZOBR_RS03890 at 821.936 kb on - strand, within AZOBR_RS03890 at 822.040 kb on + strand, within AZOBR_RS03890 at 822.116 kb on - strand at 822.184 kb on + strand at 822.184 kb on + strand at 822.184 kb on + strand at 822.184 kb on + strand at 822.184 kb on + strand at 822.184 kb on + strand at 822.184 kb on + strand at 822.185 kb on - strand at 822.185 kb on - strand at 822.185 kb on - strand at 822.185 kb on - strand at 822.185 kb on - strand at 822.185 kb on - strand at 822.185 kb on - strand at 822.260 kb on + strand at 822.261 kb on - strand at 822.462 kb on + strand at 822.462 kb on + strand at 822.462 kb on + strand at 822.462 kb on + strand at 822.463 kb on - strand at 822.463 kb on - strand at 822.463 kb on - strand at 822.465 kb on + strand at 822.534 kb on + strand, within AZOBR_RS03895 at 822.534 kb on + strand, within AZOBR_RS03895 at 822.534 kb on + strand, within AZOBR_RS03895 at 823.680 kb on + strand, within AZOBR_RS03895 at 823.681 kb on - strand, within AZOBR_RS03895 at 823.926 kb on + strand at 824.547 kb on - strand at 824.561 kb on + strand at 824.562 kb on - strand at 824.562 kb on - strand at 824.562 kb on - strand at 824.562 kb on - strand at 824.562 kb on - strand at 824.809 kb on + strand, within AZOBR_RS03905 at 824.810 kb on - strand, within AZOBR_RS03905 at 824.815 kb on + strand, within AZOBR_RS03905 at 824.815 kb on + strand, within AZOBR_RS03905 at 824.815 kb on + strand, within AZOBR_RS03905 at 824.815 kb on + strand, within AZOBR_RS03905 at 824.816 kb on - strand, within AZOBR_RS03905 at 824.816 kb on - strand, within AZOBR_RS03905 at 824.816 kb on - strand, within AZOBR_RS03905
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 821,386 + AZOBR_RS03890 0.24 -2.7 821,390 - AZOBR_RS03890 0.24 -0.0 821,548 + AZOBR_RS03890 0.39 +0.5 821,548 + AZOBR_RS03890 0.39 -3.3 821,548 + AZOBR_RS03890 0.39 +1.7 821,548 + AZOBR_RS03890 0.39 +0.1 821,548 + AZOBR_RS03890 0.39 +0.7 821,819 - AZOBR_RS03890 0.63 +0.9 821,819 - AZOBR_RS03890 0.63 -0.8 821,935 + AZOBR_RS03890 0.74 -1.9 821,935 + AZOBR_RS03890 0.74 -1.6 821,936 - AZOBR_RS03890 0.74 +0.3 822,040 + AZOBR_RS03890 0.83 -1.8 822,116 - +0.9 822,184 + -1.6 822,184 + +0.2 822,184 + +0.1 822,184 + +0.4 822,184 + +1.1 822,184 + -3.3 822,184 + -1.8 822,185 - -0.5 822,185 - +0.2 822,185 - -1.2 822,185 - -2.7 822,185 - +1.2 822,185 - -1.3 822,185 - -2.8 822,260 + +0.1 822,261 - -0.6 822,462 + -1.0 822,462 + +2.7 822,462 + +0.3 822,462 + +0.2 822,463 - +0.8 822,463 - -3.3 822,463 - +1.9 822,465 + -1.0 822,534 + AZOBR_RS03895 0.13 +0.2 822,534 + AZOBR_RS03895 0.13 -0.9 822,534 + AZOBR_RS03895 0.13 -2.2 823,680 + AZOBR_RS03895 0.85 -4.3 823,681 - AZOBR_RS03895 0.85 -1.8 823,926 + +0.7 824,547 - -0.1 824,561 + -0.2 824,562 - -5.2 824,562 - -2.8 824,562 - +1.0 824,562 - -0.1 824,562 - +2.4 824,809 + AZOBR_RS03905 0.18 -3.1 824,810 - AZOBR_RS03905 0.18 +0.3 824,815 + AZOBR_RS03905 0.18 +0.3 824,815 + AZOBR_RS03905 0.18 -0.9 824,815 + AZOBR_RS03905 0.18 -1.1 824,815 + AZOBR_RS03905 0.18 +2.0 824,816 - AZOBR_RS03905 0.18 -3.3 824,816 - AZOBR_RS03905 0.18 -2.4 824,816 - AZOBR_RS03905 0.18 +0.6
Or see this region's nucleotide sequence