Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS03200 and AZOBR_RS03205 are separated by 242 nucleotides AZOBR_RS03205 and AZOBR_RS03210 are separated by 283 nucleotides AZOBR_RS03210 and AZOBR_RS03215 are separated by 136 nucleotides AZOBR_RS03215 and AZOBR_RS03220 are separated by 113 nucleotides
AZOBR_RS03200: AZOBR_RS03200 - BolA family transcriptional regulator, at 681,001 to 681,273
_RS03200
AZOBR_RS03205: AZOBR_RS03205 - hypothetical protein, at 681,516 to 681,857
_RS03205
AZOBR_RS03210: AZOBR_RS03210 - hypothetical protein, at 682,141 to 682,755
_RS03210
AZOBR_RS03215: AZOBR_RS03215 - hypothetical protein, at 682,892 to 683,377
_RS03215
AZOBR_RS03220: AZOBR_RS03220 - 3-dehydroquinate synthase, at 683,491 to 684,627
_RS03220
Position (kb) 682
683 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 681.193 kb on + strand, within AZOBR_RS03200 at 681.194 kb on - strand, within AZOBR_RS03200 at 681.342 kb on + strand at 681.343 kb on - strand at 681.346 kb on + strand at 681.346 kb on + strand at 681.426 kb on + strand at 681.515 kb on + strand at 681.545 kb on - strand at 682.050 kb on + strand at 682.063 kb on + strand at 682.063 kb on + strand at 682.063 kb on + strand at 682.063 kb on + strand at 682.064 kb on - strand at 682.064 kb on - strand at 682.064 kb on - strand at 682.079 kb on - strand at 682.175 kb on + strand at 682.340 kb on + strand, within AZOBR_RS03210 at 682.341 kb on - strand, within AZOBR_RS03210 at 682.634 kb on + strand, within AZOBR_RS03210 at 682.634 kb on + strand, within AZOBR_RS03210 at 682.634 kb on + strand, within AZOBR_RS03210 at 682.634 kb on + strand, within AZOBR_RS03210 at 682.635 kb on - strand, within AZOBR_RS03210 at 682.635 kb on - strand, within AZOBR_RS03210 at 682.778 kb on - strand at 683.091 kb on + strand, within AZOBR_RS03215 at 683.477 kb on + strand at 683.478 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 681,193 + AZOBR_RS03200 0.70 +0.2 681,194 - AZOBR_RS03200 0.71 -4.7 681,342 + +1.6 681,343 - +0.6 681,346 + -0.1 681,346 + -0.6 681,426 + +0.4 681,515 + +1.6 681,545 - -0.8 682,050 + -2.3 682,063 + -0.9 682,063 + +1.3 682,063 + +1.0 682,063 + +0.2 682,064 - -0.3 682,064 - -0.6 682,064 - -0.1 682,079 - -0.4 682,175 + +0.3 682,340 + AZOBR_RS03210 0.32 -1.1 682,341 - AZOBR_RS03210 0.33 -0.5 682,634 + AZOBR_RS03210 0.80 -0.7 682,634 + AZOBR_RS03210 0.80 +0.8 682,634 + AZOBR_RS03210 0.80 -0.1 682,634 + AZOBR_RS03210 0.80 -0.0 682,635 - AZOBR_RS03210 0.80 -1.2 682,635 - AZOBR_RS03210 0.80 +0.5 682,778 - -1.0 683,091 + AZOBR_RS03215 0.41 -2.0 683,477 + -0.0 683,478 - -1.8
Or see this region's nucleotide sequence