Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS03190 and AZOBR_RS03195 are separated by 73 nucleotides AZOBR_RS03195 and AZOBR_RS03200 are separated by 165 nucleotides AZOBR_RS03200 and AZOBR_RS03205 are separated by 242 nucleotides
AZOBR_RS03190: AZOBR_RS03190 - aerobic cobaltochelatase subunit CobS, at 679,173 to 680,177
_RS03190
AZOBR_RS03195: AZOBR_RS03195 - molecular chaperone DnaJ, at 680,251 to 680,835
_RS03195
AZOBR_RS03200: AZOBR_RS03200 - BolA family transcriptional regulator, at 681,001 to 681,273
_RS03200
AZOBR_RS03205: AZOBR_RS03205 - hypothetical protein, at 681,516 to 681,857
_RS03205
Position (kb) 680
681 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 679.504 kb on + strand, within AZOBR_RS03190 at 679.504 kb on + strand, within AZOBR_RS03190 at 679.505 kb on - strand, within AZOBR_RS03190 at 679.505 kb on - strand, within AZOBR_RS03190 at 679.570 kb on + strand, within AZOBR_RS03190 at 680.184 kb on + strand at 680.188 kb on + strand at 680.188 kb on + strand at 680.189 kb on - strand at 680.189 kb on - strand at 680.189 kb on - strand at 680.189 kb on - strand at 680.261 kb on + strand at 680.261 kb on + strand at 680.261 kb on + strand at 680.262 kb on - strand at 680.282 kb on + strand at 680.282 kb on + strand at 680.283 kb on - strand at 680.646 kb on - strand, within AZOBR_RS03195 at 680.648 kb on + strand, within AZOBR_RS03195 at 680.648 kb on + strand, within AZOBR_RS03195 at 680.649 kb on - strand, within AZOBR_RS03195 at 680.649 kb on - strand, within AZOBR_RS03195 at 680.666 kb on + strand, within AZOBR_RS03195 at 680.696 kb on + strand, within AZOBR_RS03195 at 680.696 kb on + strand, within AZOBR_RS03195 at 680.697 kb on - strand, within AZOBR_RS03195 at 680.697 kb on - strand, within AZOBR_RS03195 at 680.699 kb on + strand, within AZOBR_RS03195 at 680.699 kb on + strand, within AZOBR_RS03195 at 680.699 kb on + strand, within AZOBR_RS03195 at 680.799 kb on - strand at 680.813 kb on + strand at 680.844 kb on + strand at 680.845 kb on - strand at 681.007 kb on + strand at 681.007 kb on + strand at 681.007 kb on + strand at 681.008 kb on - strand at 681.008 kb on - strand at 681.008 kb on - strand at 681.008 kb on - strand at 681.193 kb on + strand, within AZOBR_RS03200 at 681.194 kb on - strand, within AZOBR_RS03200 at 681.342 kb on + strand at 681.343 kb on - strand at 681.346 kb on + strand at 681.346 kb on + strand at 681.426 kb on + strand at 681.515 kb on + strand at 681.545 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 679,504 + AZOBR_RS03190 0.33 -3.4 679,504 + AZOBR_RS03190 0.33 -0.7 679,505 - AZOBR_RS03190 0.33 -2.2 679,505 - AZOBR_RS03190 0.33 -0.8 679,570 + AZOBR_RS03190 0.40 -2.1 680,184 + -3.0 680,188 + -1.2 680,188 + -1.8 680,189 - -4.5 680,189 - -3.7 680,189 - -2.0 680,189 - -2.2 680,261 + -1.7 680,261 + +1.6 680,261 + -3.9 680,262 - -0.0 680,282 + -1.1 680,282 + -4.5 680,283 - -0.2 680,646 - AZOBR_RS03195 0.68 -0.2 680,648 + AZOBR_RS03195 0.68 -0.5 680,648 + AZOBR_RS03195 0.68 -1.4 680,649 - AZOBR_RS03195 0.68 -0.7 680,649 - AZOBR_RS03195 0.68 +0.1 680,666 + AZOBR_RS03195 0.71 -0.5 680,696 + AZOBR_RS03195 0.76 -0.1 680,696 + AZOBR_RS03195 0.76 -1.9 680,697 - AZOBR_RS03195 0.76 -0.3 680,697 - AZOBR_RS03195 0.76 -2.3 680,699 + AZOBR_RS03195 0.77 -0.4 680,699 + AZOBR_RS03195 0.77 +0.4 680,699 + AZOBR_RS03195 0.77 -2.3 680,799 - +0.2 680,813 + +2.2 680,844 + +0.2 680,845 - +1.5 681,007 + -0.5 681,007 + +1.5 681,007 + -1.4 681,008 - +0.4 681,008 - -1.2 681,008 - -0.4 681,008 - -2.2 681,193 + AZOBR_RS03200 0.70 +0.2 681,194 - AZOBR_RS03200 0.71 -4.7 681,342 + +1.6 681,343 - +0.6 681,346 + -0.1 681,346 + -0.6 681,426 + +0.4 681,515 + +1.6 681,545 - -0.8
Or see this region's nucleotide sequence