Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS03105 and AZOBR_RS03110 are separated by 322 nucleotides AZOBR_RS03110 and AZOBR_RS03115 are separated by 88 nucleotides AZOBR_RS03115 and AZOBR_RS03120 are separated by 88 nucleotides
AZOBR_RS03105: AZOBR_RS03105 - membrane protein, at 663,390 to 664,160
_RS03105
AZOBR_RS03110: AZOBR_RS03110 - integration host factor subunit beta, at 664,483 to 664,767
_RS03110
AZOBR_RS03115: AZOBR_RS03115 - hypothetical protein, at 664,856 to 665,245
_RS03115
AZOBR_RS03120: AZOBR_RS03120 - ornithine cyclodeaminase, at 665,334 to 666,290
_RS03120
Position (kb) 664
665
666 Strain fitness (log2 ratio) -2
-1
0
1
2 at 663.979 kb on + strand, within AZOBR_RS03105 at 663.980 kb on - strand, within AZOBR_RS03105 at 663.980 kb on - strand, within AZOBR_RS03105 at 664.144 kb on + strand at 664.391 kb on + strand at 664.391 kb on + strand at 664.534 kb on + strand, within AZOBR_RS03110 at 664.534 kb on + strand at 664.535 kb on - strand, within AZOBR_RS03110 at 664.840 kb on + strand at 664.841 kb on - strand at 665.097 kb on - strand, within AZOBR_RS03115 at 665.097 kb on - strand, within AZOBR_RS03115 at 665.587 kb on - strand, within AZOBR_RS03120 at 665.688 kb on + strand, within AZOBR_RS03120 at 665.689 kb on - strand, within AZOBR_RS03120 at 666.148 kb on - strand, within AZOBR_RS03120 at 666.186 kb on + strand, within AZOBR_RS03120
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 663,979 + AZOBR_RS03105 0.76 +1.1 663,980 - AZOBR_RS03105 0.77 +1.3 663,980 - AZOBR_RS03105 0.77 +0.1 664,144 + +0.3 664,391 + -0.2 664,391 + +0.4 664,534 + AZOBR_RS03110 0.18 -0.8 664,534 + -0.5 664,535 - AZOBR_RS03110 0.18 -1.7 664,840 + -1.5 664,841 - +2.4 665,097 - AZOBR_RS03115 0.62 +1.7 665,097 - AZOBR_RS03115 0.62 +2.3 665,587 - AZOBR_RS03120 0.26 -1.6 665,688 + AZOBR_RS03120 0.37 -0.8 665,689 - AZOBR_RS03120 0.37 -2.1 666,148 - AZOBR_RS03120 0.85 -0.2 666,186 + AZOBR_RS03120 0.89 +0.9
Or see this region's nucleotide sequence