Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS03085 and AZOBR_RS03090 are separated by 87 nucleotides AZOBR_RS03090 and AZOBR_RS03095 are separated by 5 nucleotides AZOBR_RS03095 and AZOBR_RS03100 are separated by 155 nucleotides
AZOBR_RS03085: AZOBR_RS03085 - gamma-glutamyltransferase, at 657,578 to 659,302
_RS03085
AZOBR_RS03090: AZOBR_RS03090 - 3-phosphoshikimate 1-carboxyvinyltransferase, at 659,390 to 660,727
_RS03090
AZOBR_RS03095: AZOBR_RS03095 - cytidylate kinase, at 660,733 to 661,395
_RS03095
AZOBR_RS03100: AZOBR_RS03100 - 30S ribosomal protein S1, at 661,551 to 663,260
_RS03100
Position (kb) 659
660
661 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 658.412 kb on + strand, within AZOBR_RS03085 at 658.413 kb on - strand, within AZOBR_RS03085 at 658.421 kb on + strand, within AZOBR_RS03085 at 658.421 kb on + strand, within AZOBR_RS03085 at 658.421 kb on + strand, within AZOBR_RS03085 at 658.421 kb on + strand, within AZOBR_RS03085 at 658.422 kb on - strand, within AZOBR_RS03085 at 658.422 kb on - strand, within AZOBR_RS03085 at 658.422 kb on - strand, within AZOBR_RS03085 at 659.036 kb on + strand, within AZOBR_RS03085 at 659.037 kb on - strand, within AZOBR_RS03085 at 659.346 kb on + strand at 659.346 kb on + strand at 659.346 kb on + strand at 659.346 kb on + strand at 659.346 kb on + strand at 661.434 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 658,412 + AZOBR_RS03085 0.48 -2.9 658,413 - AZOBR_RS03085 0.48 -2.3 658,421 + AZOBR_RS03085 0.49 +0.4 658,421 + AZOBR_RS03085 0.49 +0.4 658,421 + AZOBR_RS03085 0.49 -0.7 658,421 + AZOBR_RS03085 0.49 +0.5 658,422 - AZOBR_RS03085 0.49 +0.3 658,422 - AZOBR_RS03085 0.49 +1.7 658,422 - AZOBR_RS03085 0.49 -1.3 659,036 + AZOBR_RS03085 0.85 +0.1 659,037 - AZOBR_RS03085 0.85 -2.2 659,346 + +2.2 659,346 + +1.6 659,346 + -1.1 659,346 + +0.3 659,346 + +0.2 661,434 + -0.5
Or see this region's nucleotide sequence