Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS02990 and AZOBR_RS02995 are separated by 442 nucleotides AZOBR_RS02995 and AZOBR_RS03000 are separated by 168 nucleotides AZOBR_RS03000 and AZOBR_RS03005 are separated by 87 nucleotides
AZOBR_RS02990: AZOBR_RS02990 - hypothetical protein, at 636,593 to 638,194
_RS02990
AZOBR_RS02995: AZOBR_RS02995 - transcriptional regulator, at 638,637 to 639,491
_RS02995
AZOBR_RS03000: AZOBR_RS03000 - hypothetical protein, at 639,660 to 640,034
_RS03000
AZOBR_RS03005: AZOBR_RS03005 - hypothetical protein, at 640,122 to 641,219
_RS03005
Position (kb) 638
639
640 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 637.764 kb on + strand, within AZOBR_RS02990 at 637.764 kb on + strand, within AZOBR_RS02990 at 637.765 kb on - strand, within AZOBR_RS02990 at 637.852 kb on - strand, within AZOBR_RS02990 at 638.001 kb on + strand, within AZOBR_RS02990 at 638.001 kb on + strand, within AZOBR_RS02990 at 638.001 kb on + strand, within AZOBR_RS02990 at 638.002 kb on - strand, within AZOBR_RS02990 at 638.002 kb on - strand, within AZOBR_RS02990 at 638.100 kb on + strand at 638.101 kb on - strand at 638.188 kb on - strand at 638.188 kb on - strand at 638.188 kb on - strand at 638.280 kb on + strand at 638.687 kb on - strand at 638.687 kb on - strand at 638.893 kb on + strand, within AZOBR_RS02995 at 638.893 kb on + strand, within AZOBR_RS02995 at 638.894 kb on - strand, within AZOBR_RS02995 at 639.110 kb on - strand, within AZOBR_RS02995 at 639.777 kb on + strand, within AZOBR_RS03000 at 639.778 kb on - strand, within AZOBR_RS03000 at 639.795 kb on + strand, within AZOBR_RS03000 at 639.795 kb on + strand, within AZOBR_RS03000 at 639.795 kb on + strand, within AZOBR_RS03000 at 639.796 kb on - strand, within AZOBR_RS03000 at 639.796 kb on - strand, within AZOBR_RS03000 at 639.796 kb on - strand, within AZOBR_RS03000 at 639.964 kb on - strand, within AZOBR_RS03000
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 637,764 + AZOBR_RS02990 0.73 +0.8 637,764 + AZOBR_RS02990 0.73 -0.6 637,765 - AZOBR_RS02990 0.73 +1.2 637,852 - AZOBR_RS02990 0.79 -1.3 638,001 + AZOBR_RS02990 0.88 -1.9 638,001 + AZOBR_RS02990 0.88 +0.0 638,001 + AZOBR_RS02990 0.88 -2.7 638,002 - AZOBR_RS02990 0.88 +1.3 638,002 - AZOBR_RS02990 0.88 +0.9 638,100 + -1.4 638,101 - +0.5 638,188 - +1.3 638,188 - +0.1 638,188 - +2.4 638,280 + +0.0 638,687 - +0.6 638,687 - +0.4 638,893 + AZOBR_RS02995 0.30 -0.4 638,893 + AZOBR_RS02995 0.30 -2.8 638,894 - AZOBR_RS02995 0.30 +1.6 639,110 - AZOBR_RS02995 0.55 +1.0 639,777 + AZOBR_RS03000 0.31 -0.1 639,778 - AZOBR_RS03000 0.31 -0.6 639,795 + AZOBR_RS03000 0.36 +0.2 639,795 + AZOBR_RS03000 0.36 -1.8 639,795 + AZOBR_RS03000 0.36 +0.8 639,796 - AZOBR_RS03000 0.36 -0.6 639,796 - AZOBR_RS03000 0.36 -1.0 639,796 - AZOBR_RS03000 0.36 +0.1 639,964 - AZOBR_RS03000 0.81 +0.4
Or see this region's nucleotide sequence