Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS02985 and AZOBR_RS02990 are separated by 357 nucleotides AZOBR_RS02990 and AZOBR_RS02995 are separated by 442 nucleotides
AZOBR_RS02985: AZOBR_RS02985 - aconitate hydratase, at 633,545 to 636,235
_RS02985
AZOBR_RS02990: AZOBR_RS02990 - hypothetical protein, at 636,593 to 638,194
_RS02990
AZOBR_RS02995: AZOBR_RS02995 - transcriptional regulator, at 638,637 to 639,491
_RS02995
Position (kb) 636
637
638
639 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 635.631 kb on - strand, within AZOBR_RS02985 at 635.631 kb on - strand, within AZOBR_RS02985 at 635.780 kb on + strand, within AZOBR_RS02985 at 635.781 kb on - strand, within AZOBR_RS02985 at 635.807 kb on + strand, within AZOBR_RS02985 at 635.825 kb on + strand, within AZOBR_RS02985 at 635.825 kb on + strand, within AZOBR_RS02985 at 635.870 kb on + strand, within AZOBR_RS02985 at 636.069 kb on + strand at 636.070 kb on - strand at 636.070 kb on - strand at 636.070 kb on - strand at 636.070 kb on - strand at 636.163 kb on + strand at 636.164 kb on - strand at 636.164 kb on - strand at 636.182 kb on + strand at 636.306 kb on + strand at 636.306 kb on + strand at 636.307 kb on - strand at 636.396 kb on + strand at 636.397 kb on - strand at 636.463 kb on - strand at 636.463 kb on - strand at 636.541 kb on - strand at 636.564 kb on + strand at 636.564 kb on + strand at 636.564 kb on + strand at 636.564 kb on + strand at 636.565 kb on - strand at 636.565 kb on - strand at 636.696 kb on + strand at 636.696 kb on + strand at 636.696 kb on + strand at 636.697 kb on - strand at 636.697 kb on - strand at 636.697 kb on - strand at 636.697 kb on - strand at 637.027 kb on - strand, within AZOBR_RS02990 at 637.290 kb on + strand, within AZOBR_RS02990 at 637.291 kb on - strand, within AZOBR_RS02990 at 637.291 kb on - strand, within AZOBR_RS02990 at 637.329 kb on + strand, within AZOBR_RS02990 at 637.329 kb on + strand, within AZOBR_RS02990 at 637.329 kb on + strand, within AZOBR_RS02990 at 637.329 kb on + strand, within AZOBR_RS02990 at 637.329 kb on + strand, within AZOBR_RS02990 at 637.330 kb on - strand, within AZOBR_RS02990 at 637.330 kb on - strand, within AZOBR_RS02990 at 637.330 kb on - strand, within AZOBR_RS02990 at 637.330 kb on - strand, within AZOBR_RS02990 at 637.330 kb on - strand, within AZOBR_RS02990 at 637.339 kb on - strand, within AZOBR_RS02990 at 637.626 kb on + strand, within AZOBR_RS02990 at 637.626 kb on + strand, within AZOBR_RS02990 at 637.627 kb on - strand, within AZOBR_RS02990 at 637.627 kb on - strand, within AZOBR_RS02990 at 637.764 kb on + strand, within AZOBR_RS02990 at 637.764 kb on + strand, within AZOBR_RS02990 at 637.765 kb on - strand, within AZOBR_RS02990 at 637.852 kb on - strand, within AZOBR_RS02990 at 638.001 kb on + strand, within AZOBR_RS02990 at 638.001 kb on + strand, within AZOBR_RS02990 at 638.001 kb on + strand, within AZOBR_RS02990 at 638.002 kb on - strand, within AZOBR_RS02990 at 638.002 kb on - strand, within AZOBR_RS02990 at 638.100 kb on + strand at 638.101 kb on - strand at 638.188 kb on - strand at 638.188 kb on - strand at 638.188 kb on - strand at 638.280 kb on + strand at 638.687 kb on - strand at 638.687 kb on - strand at 638.893 kb on + strand, within AZOBR_RS02995 at 638.893 kb on + strand, within AZOBR_RS02995 at 638.894 kb on - strand, within AZOBR_RS02995 at 639.110 kb on - strand, within AZOBR_RS02995
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 635,631 - AZOBR_RS02985 0.78 +0.1 635,631 - AZOBR_RS02985 0.78 +1.8 635,780 + AZOBR_RS02985 0.83 +1.2 635,781 - AZOBR_RS02985 0.83 +1.9 635,807 + AZOBR_RS02985 0.84 +0.2 635,825 + AZOBR_RS02985 0.85 -1.3 635,825 + AZOBR_RS02985 0.85 +0.8 635,870 + AZOBR_RS02985 0.86 +0.7 636,069 + +0.6 636,070 - +0.8 636,070 - +0.9 636,070 - +0.6 636,070 - +0.8 636,163 + +1.1 636,164 - -1.7 636,164 - -0.5 636,182 + +1.6 636,306 + +0.5 636,306 + +0.3 636,307 - +2.1 636,396 + -2.2 636,397 - +1.0 636,463 - +0.4 636,463 - -2.3 636,541 - -2.5 636,564 + -3.5 636,564 + +0.4 636,564 + -2.7 636,564 + +0.2 636,565 - +2.2 636,565 - +0.4 636,696 + +0.6 636,696 + +0.2 636,696 + -1.0 636,697 - +0.1 636,697 - -0.6 636,697 - +0.3 636,697 - -2.3 637,027 - AZOBR_RS02990 0.27 -0.1 637,290 + AZOBR_RS02990 0.44 +0.1 637,291 - AZOBR_RS02990 0.44 +0.8 637,291 - AZOBR_RS02990 0.44 +0.2 637,329 + AZOBR_RS02990 0.46 +0.0 637,329 + AZOBR_RS02990 0.46 -1.2 637,329 + AZOBR_RS02990 0.46 -0.6 637,329 + AZOBR_RS02990 0.46 -0.7 637,329 + AZOBR_RS02990 0.46 -0.2 637,330 - AZOBR_RS02990 0.46 +0.3 637,330 - AZOBR_RS02990 0.46 +2.2 637,330 - AZOBR_RS02990 0.46 -0.1 637,330 - AZOBR_RS02990 0.46 +0.6 637,330 - AZOBR_RS02990 0.46 -3.7 637,339 - AZOBR_RS02990 0.47 +0.3 637,626 + AZOBR_RS02990 0.64 -3.7 637,626 + AZOBR_RS02990 0.64 -0.7 637,627 - AZOBR_RS02990 0.65 -0.3 637,627 - AZOBR_RS02990 0.65 -0.9 637,764 + AZOBR_RS02990 0.73 +0.8 637,764 + AZOBR_RS02990 0.73 -0.6 637,765 - AZOBR_RS02990 0.73 +1.2 637,852 - AZOBR_RS02990 0.79 -1.3 638,001 + AZOBR_RS02990 0.88 -1.9 638,001 + AZOBR_RS02990 0.88 +0.0 638,001 + AZOBR_RS02990 0.88 -2.7 638,002 - AZOBR_RS02990 0.88 +1.3 638,002 - AZOBR_RS02990 0.88 +0.9 638,100 + -1.4 638,101 - +0.5 638,188 - +1.3 638,188 - +0.1 638,188 - +2.4 638,280 + +0.0 638,687 - +0.6 638,687 - +0.4 638,893 + AZOBR_RS02995 0.30 -0.4 638,893 + AZOBR_RS02995 0.30 -2.8 638,894 - AZOBR_RS02995 0.30 +1.6 639,110 - AZOBR_RS02995 0.55 +1.0
Or see this region's nucleotide sequence