Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS02110 and AZOBR_RS02115 are separated by 267 nucleotides AZOBR_RS02115 and AZOBR_RS02120 are separated by 58 nucleotides AZOBR_RS02120 and AZOBR_RS02125 are separated by 213 nucleotides
AZOBR_RS02110: AZOBR_RS02110 - protein-PII uridylyltransferase, at 432,723 to 435,524
_RS02110
AZOBR_RS02115: AZOBR_RS02115 - hypothetical protein, at 435,792 to 436,103
_RS02115
AZOBR_RS02120: AZOBR_RS02120 - hypothetical protein, at 436,162 to 436,635
_RS02120
AZOBR_RS02125: AZOBR_RS02125 - DNA mismatch repair protein MutS, at 436,849 to 439,551
_RS02125
Position (kb) 436
437 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 435.586 kb on + strand at 435.603 kb on + strand at 435.603 kb on + strand at 435.779 kb on + strand at 435.779 kb on + strand at 435.780 kb on - strand at 436.163 kb on + strand at 436.446 kb on - strand, within AZOBR_RS02120 at 436.763 kb on - strand at 436.763 kb on - strand at 436.799 kb on + strand at 436.800 kb on - strand at 436.960 kb on + strand at 436.978 kb on + strand at 437.104 kb on + strand at 437.105 kb on - strand at 437.452 kb on + strand, within AZOBR_RS02125 at 437.453 kb on - strand, within AZOBR_RS02125 at 437.453 kb on - strand, within AZOBR_RS02125 at 437.569 kb on + strand, within AZOBR_RS02125 at 437.570 kb on - strand, within AZOBR_RS02125 at 437.621 kb on - strand, within AZOBR_RS02125
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 435,586 + -2.4 435,603 + -3.7 435,603 + -1.5 435,779 + +0.1 435,779 + +0.8 435,780 - +0.8 436,163 + +0.2 436,446 - AZOBR_RS02120 0.60 +0.5 436,763 - +0.9 436,763 - +1.4 436,799 + +0.8 436,800 - +0.6 436,960 + +0.4 436,978 + +0.6 437,104 + -0.9 437,105 - -4.4 437,452 + AZOBR_RS02125 0.22 +1.1 437,453 - AZOBR_RS02125 0.22 +2.6 437,453 - AZOBR_RS02125 0.22 +1.0 437,569 + AZOBR_RS02125 0.27 +0.2 437,570 - AZOBR_RS02125 0.27 -1.5 437,621 - AZOBR_RS02125 0.29 +0.4
Or see this region's nucleotide sequence