Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS02025 and AZOBR_RS02030 are separated by 234 nucleotides AZOBR_RS02030 and AZOBR_RS02035 are separated by 209 nucleotides
AZOBR_RS02025: AZOBR_RS02025 - transporter, at 414,183 to 415,673
_RS02025
AZOBR_RS02030: AZOBR_RS02030 - hypothetical protein, at 415,908 to 417,062
_RS02030
AZOBR_RS02035: AZOBR_RS02035 - 3-ketoacyl-ACP reductase, at 417,272 to 418,024
_RS02035
Position (kb) 415
416
417
418 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 414.974 kb on - strand, within AZOBR_RS02025 at 415.021 kb on - strand, within AZOBR_RS02025 at 416.026 kb on + strand, within AZOBR_RS02030 at 416.050 kb on + strand, within AZOBR_RS02030 at 416.050 kb on + strand, within AZOBR_RS02030 at 416.051 kb on - strand, within AZOBR_RS02030 at 416.182 kb on + strand, within AZOBR_RS02030 at 416.425 kb on + strand, within AZOBR_RS02030 at 416.425 kb on + strand, within AZOBR_RS02030 at 416.426 kb on - strand, within AZOBR_RS02030 at 416.426 kb on - strand, within AZOBR_RS02030 at 416.629 kb on + strand, within AZOBR_RS02030 at 416.638 kb on + strand, within AZOBR_RS02030 at 416.638 kb on + strand, within AZOBR_RS02030 at 416.638 kb on + strand, within AZOBR_RS02030 at 416.639 kb on - strand, within AZOBR_RS02030 at 416.639 kb on - strand, within AZOBR_RS02030 at 416.639 kb on - strand, within AZOBR_RS02030 at 416.639 kb on - strand, within AZOBR_RS02030 at 416.812 kb on + strand, within AZOBR_RS02030 at 416.812 kb on + strand, within AZOBR_RS02030 at 416.813 kb on - strand, within AZOBR_RS02030 at 416.813 kb on - strand, within AZOBR_RS02030 at 416.813 kb on - strand, within AZOBR_RS02030 at 416.813 kb on - strand, within AZOBR_RS02030 at 416.884 kb on + strand, within AZOBR_RS02030 at 416.885 kb on - strand, within AZOBR_RS02030 at 416.885 kb on - strand, within AZOBR_RS02030 at 416.885 kb on - strand, within AZOBR_RS02030 at 416.885 kb on - strand, within AZOBR_RS02030 at 416.887 kb on + strand, within AZOBR_RS02030 at 416.888 kb on - strand, within AZOBR_RS02030 at 416.888 kb on - strand, within AZOBR_RS02030 at 416.888 kb on - strand, within AZOBR_RS02030 at 416.888 kb on - strand, within AZOBR_RS02030 at 416.888 kb on - strand, within AZOBR_RS02030 at 416.888 kb on - strand, within AZOBR_RS02030 at 416.888 kb on - strand, within AZOBR_RS02030 at 416.941 kb on + strand, within AZOBR_RS02030 at 416.942 kb on - strand, within AZOBR_RS02030 at 416.942 kb on - strand, within AZOBR_RS02030 at 416.942 kb on - strand, within AZOBR_RS02030 at 417.549 kb on + strand, within AZOBR_RS02035 at 417.549 kb on + strand, within AZOBR_RS02035 at 417.549 kb on + strand, within AZOBR_RS02035 at 417.550 kb on - strand, within AZOBR_RS02035 at 417.903 kb on + strand, within AZOBR_RS02035 at 417.903 kb on + strand, within AZOBR_RS02035 at 418.062 kb on + strand at 418.062 kb on + strand at 418.062 kb on + strand at 418.062 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 414,974 - AZOBR_RS02025 0.53 +0.7 415,021 - AZOBR_RS02025 0.56 -2.6 416,026 + AZOBR_RS02030 0.10 -0.3 416,050 + AZOBR_RS02030 0.12 -1.7 416,050 + AZOBR_RS02030 0.12 +1.2 416,051 - AZOBR_RS02030 0.12 -0.2 416,182 + AZOBR_RS02030 0.24 -2.9 416,425 + AZOBR_RS02030 0.45 +0.4 416,425 + AZOBR_RS02030 0.45 +0.2 416,426 - AZOBR_RS02030 0.45 -0.9 416,426 - AZOBR_RS02030 0.45 -0.0 416,629 + AZOBR_RS02030 0.62 -2.5 416,638 + AZOBR_RS02030 0.63 +0.1 416,638 + AZOBR_RS02030 0.63 +0.2 416,638 + AZOBR_RS02030 0.63 -1.5 416,639 - AZOBR_RS02030 0.63 +1.0 416,639 - AZOBR_RS02030 0.63 -0.3 416,639 - AZOBR_RS02030 0.63 -2.4 416,639 - AZOBR_RS02030 0.63 -0.5 416,812 + AZOBR_RS02030 0.78 +0.7 416,812 + AZOBR_RS02030 0.78 +1.3 416,813 - AZOBR_RS02030 0.78 +0.3 416,813 - AZOBR_RS02030 0.78 +0.6 416,813 - AZOBR_RS02030 0.78 +0.3 416,813 - AZOBR_RS02030 0.78 +0.8 416,884 + AZOBR_RS02030 0.85 -4.8 416,885 - AZOBR_RS02030 0.85 +0.7 416,885 - AZOBR_RS02030 0.85 +0.8 416,885 - AZOBR_RS02030 0.85 -4.1 416,885 - AZOBR_RS02030 0.85 -0.0 416,887 + AZOBR_RS02030 0.85 -0.3 416,888 - AZOBR_RS02030 0.85 +0.4 416,888 - AZOBR_RS02030 0.85 +2.1 416,888 - AZOBR_RS02030 0.85 +2.0 416,888 - AZOBR_RS02030 0.85 +1.4 416,888 - AZOBR_RS02030 0.85 -0.1 416,888 - AZOBR_RS02030 0.85 -2.9 416,888 - AZOBR_RS02030 0.85 -0.0 416,941 + AZOBR_RS02030 0.89 -0.3 416,942 - AZOBR_RS02030 0.90 +0.6 416,942 - AZOBR_RS02030 0.90 +0.1 416,942 - AZOBR_RS02030 0.90 -0.4 417,549 + AZOBR_RS02035 0.37 -1.6 417,549 + AZOBR_RS02035 0.37 -3.6 417,549 + AZOBR_RS02035 0.37 -1.1 417,550 - AZOBR_RS02035 0.37 -2.8 417,903 + AZOBR_RS02035 0.84 +1.1 417,903 + AZOBR_RS02035 0.84 -3.4 418,062 + +0.1 418,062 + -0.2 418,062 + -2.3 418,062 + -0.1
Or see this region's nucleotide sequence