Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS01750 and AZOBR_RS01755 are separated by 427 nucleotides AZOBR_RS01755 and AZOBR_RS01760 overlap by 4 nucleotides AZOBR_RS01760 and AZOBR_RS01765 overlap by 4 nucleotides
AZOBR_RS01750: AZOBR_RS01750 - uroporphyrinogen decarboxylase, at 356,715 to 357,761
_RS01750
AZOBR_RS01755: AZOBR_RS01755 - hypothetical protein, at 358,189 to 359,037
_RS01755
AZOBR_RS01760: AZOBR_RS01760 - septum formation protein Maf, at 359,034 to 359,642
_RS01760
AZOBR_RS01765: AZOBR_RS01765 - shikimate 5-dehydrogenase, at 359,639 to 360,478
_RS01765
Position (kb) 358
359
360 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 357.790 kb on - strand at 357.790 kb on - strand at 357.790 kb on - strand at 357.825 kb on - strand at 357.825 kb on - strand at 357.995 kb on - strand at 357.995 kb on - strand at 358.023 kb on + strand at 358.048 kb on - strand at 358.669 kb on + strand, within AZOBR_RS01755 at 358.669 kb on + strand, within AZOBR_RS01755 at 358.669 kb on + strand, within AZOBR_RS01755 at 358.669 kb on + strand, within AZOBR_RS01755 at 358.669 kb on + strand, within AZOBR_RS01755 at 358.849 kb on + strand, within AZOBR_RS01755 at 358.896 kb on + strand, within AZOBR_RS01755 at 358.896 kb on + strand, within AZOBR_RS01755 at 358.896 kb on + strand, within AZOBR_RS01755 at 359.472 kb on + strand, within AZOBR_RS01760 at 359.472 kb on + strand, within AZOBR_RS01760 at 359.472 kb on + strand, within AZOBR_RS01760 at 359.517 kb on + strand, within AZOBR_RS01760 at 359.517 kb on + strand, within AZOBR_RS01760
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 357,790 - +1.3 357,790 - +1.3 357,790 - -0.4 357,825 - -0.2 357,825 - +1.4 357,995 - -0.1 357,995 - +0.7 358,023 + -0.7 358,048 - +0.5 358,669 + AZOBR_RS01755 0.57 -0.7 358,669 + AZOBR_RS01755 0.57 -0.5 358,669 + AZOBR_RS01755 0.57 -1.0 358,669 + AZOBR_RS01755 0.57 +0.4 358,669 + AZOBR_RS01755 0.57 -1.4 358,849 + AZOBR_RS01755 0.78 +0.1 358,896 + AZOBR_RS01755 0.83 -0.4 358,896 + AZOBR_RS01755 0.83 -1.5 358,896 + AZOBR_RS01755 0.83 -1.6 359,472 + AZOBR_RS01760 0.72 -3.2 359,472 + AZOBR_RS01760 0.72 +0.9 359,472 + AZOBR_RS01760 0.72 +1.3 359,517 + AZOBR_RS01760 0.79 +0.2 359,517 + AZOBR_RS01760 0.79 +2.5
Or see this region's nucleotide sequence