Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS01725

Experiment: D-Cycloserine 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS01715 and AZOBR_RS01720 are separated by 217 nucleotidesAZOBR_RS01720 and AZOBR_RS01725 are separated by 140 nucleotides AZOBR_RS01715: AZOBR_RS01715 - exlusion protein FxsA, at 349,741 to 350,241 _RS01715 AZOBR_RS01720: AZOBR_RS01720 - preprotein translocase subunit SecB, at 350,459 to 350,956 _RS01720 AZOBR_RS01725: AZOBR_RS01725 - transcription termination factor Rho, at 351,097 to 352,353 _RS01725 Position (kb) 351 352 353Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 350.222 kb on - strandat 350.399 kb on + strandat 350.400 kb on - strandat 350.531 kb on + strand, within AZOBR_RS01720at 350.531 kb on + strand, within AZOBR_RS01720at 350.532 kb on - strand, within AZOBR_RS01720at 350.651 kb on + strand, within AZOBR_RS01720at 350.651 kb on + strand, within AZOBR_RS01720at 350.652 kb on - strand, within AZOBR_RS01720at 350.724 kb on - strand, within AZOBR_RS01720at 351.099 kb on - strandat 352.655 kb on + strandat 352.957 kb on + strandat 352.957 kb on + strandat 352.957 kb on + strandat 352.957 kb on + strandat 352.957 kb on + strandat 352.958 kb on - strandat 352.958 kb on - strandat 353.058 kb on - strandat 353.254 kb on + strandat 353.255 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml
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350,222 - +0.0
350,399 + +0.2
350,400 - +2.4
350,531 + AZOBR_RS01720 0.14 +0.2
350,531 + AZOBR_RS01720 0.14 -3.8
350,532 - AZOBR_RS01720 0.15 +1.6
350,651 + AZOBR_RS01720 0.39 -1.8
350,651 + AZOBR_RS01720 0.39 +2.4
350,652 - AZOBR_RS01720 0.39 +2.7
350,724 - AZOBR_RS01720 0.53 +3.1
351,099 - -2.7
352,655 + -5.0
352,957 + -2.3
352,957 + -0.8
352,957 + -5.3
352,957 + -0.1
352,957 + -0.4
352,958 - -0.3
352,958 - -0.0
353,058 - +1.0
353,254 + -4.4
353,255 - +0.5

Or see this region's nucleotide sequence