Experiment: D-Cycloserine 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS01370 and AZOBR_RS01375 are separated by 11 nucleotides AZOBR_RS01375 and AZOBR_RS01380 are separated by 461 nucleotides AZOBR_RS01380 and AZOBR_RS01385 are separated by 227 nucleotides
AZOBR_RS01370: AZOBR_RS01370 - metallopeptidase, at 284,268 to 285,161
_RS01370
AZOBR_RS01375: AZOBR_RS01375 - hypothetical protein, at 285,173 to 285,685
_RS01375
AZOBR_RS01380: AZOBR_RS01380 - hypothetical protein, at 286,147 to 286,452
_RS01380
AZOBR_RS01385: AZOBR_RS01385 - polynucleotide phosphorylase, at 286,680 to 288,800
_RS01385
Position (kb) 286
287 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 285.160 kb on - strand at 285.160 kb on - strand at 285.394 kb on - strand, within AZOBR_RS01375 at 285.394 kb on - strand, within AZOBR_RS01375 at 285.550 kb on + strand, within AZOBR_RS01375 at 285.550 kb on + strand, within AZOBR_RS01375 at 285.642 kb on + strand at 285.643 kb on - strand at 285.717 kb on - strand at 285.754 kb on + strand at 285.755 kb on - strand at 285.755 kb on - strand at 285.836 kb on + strand at 286.083 kb on - strand at 286.083 kb on - strand at 286.550 kb on + strand at 286.550 kb on + strand at 286.551 kb on - strand at 286.648 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml remove 285,160 - +0.4 285,160 - -1.8 285,394 - AZOBR_RS01375 0.43 +1.4 285,394 - AZOBR_RS01375 0.43 -0.3 285,550 + AZOBR_RS01375 0.73 -0.5 285,550 + AZOBR_RS01375 0.73 -0.4 285,642 + -1.2 285,643 - -2.8 285,717 - -0.4 285,754 + -0.3 285,755 - +1.6 285,755 - -2.4 285,836 + +0.2 286,083 - +0.3 286,083 - +1.3 286,550 + +0.1 286,550 + -0.4 286,551 - +1.5 286,648 + +0.6
Or see this region's nucleotide sequence