Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS01055

Experiment: D-Cycloserine 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS01050 and AZOBR_RS01055 are separated by 88 nucleotidesAZOBR_RS01055 and AZOBR_RS01060 are separated by 356 nucleotides AZOBR_RS01050: AZOBR_RS01050 - hypothetical protein, at 212,590 to 215,127 _RS01050 AZOBR_RS01055: AZOBR_RS01055 - cold-shock protein, at 215,216 to 215,425 _RS01055 AZOBR_RS01060: AZOBR_RS01060 - ATPase AAA, at 215,782 to 217,218 _RS01060 Position (kb) 215 216Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 214.511 kb on - strand, within AZOBR_RS01050at 215.195 kb on - strandat 215.609 kb on - strandat 215.823 kb on - strandat 215.823 kb on - strandat 215.823 kb on - strandat 216.152 kb on + strand, within AZOBR_RS01060at 216.153 kb on - strand, within AZOBR_RS01060at 216.153 kb on - strand, within AZOBR_RS01060at 216.153 kb on - strand, within AZOBR_RS01060at 216.311 kb on + strand, within AZOBR_RS01060at 216.311 kb on + strand, within AZOBR_RS01060at 216.311 kb on + strand, within AZOBR_RS01060at 216.311 kb on + strand, within AZOBR_RS01060at 216.312 kb on - strand, within AZOBR_RS01060at 216.312 kb on - strand, within AZOBR_RS01060at 216.312 kb on - strand, within AZOBR_RS01060at 216.312 kb on - strand, within AZOBR_RS01060

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml
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214,511 - AZOBR_RS01050 0.76 +1.5
215,195 - -4.3
215,609 - +0.0
215,823 - -0.3
215,823 - +1.1
215,823 - +0.5
216,152 + AZOBR_RS01060 0.26 +0.0
216,153 - AZOBR_RS01060 0.26 +1.0
216,153 - AZOBR_RS01060 0.26 -1.2
216,153 - AZOBR_RS01060 0.26 -1.5
216,311 + AZOBR_RS01060 0.37 -2.5
216,311 + AZOBR_RS01060 0.37 +1.2
216,311 + AZOBR_RS01060 0.37 -2.8
216,311 + AZOBR_RS01060 0.37 -0.3
216,312 - AZOBR_RS01060 0.37 +0.2
216,312 - AZOBR_RS01060 0.37 +0.6
216,312 - AZOBR_RS01060 0.37 -0.3
216,312 - AZOBR_RS01060 0.37 -0.9

Or see this region's nucleotide sequence