Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS00915

Experiment: D-Cycloserine 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS00910 and AZOBR_RS00915 are separated by 69 nucleotidesAZOBR_RS00915 and AZOBR_RS00920 are separated by 399 nucleotides AZOBR_RS00910: AZOBR_RS00910 - proline iminopeptidase, at 181,326 to 182,276 _RS00910 AZOBR_RS00915: AZOBR_RS00915 - nuclease, at 182,346 to 183,182 _RS00915 AZOBR_RS00920: AZOBR_RS00920 - peptidase, at 183,582 to 184,904 _RS00920 Position (kb) 182 183 184Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 181.484 kb on - strand, within AZOBR_RS00910at 181.576 kb on + strand, within AZOBR_RS00910at 181.576 kb on + strand, within AZOBR_RS00910at 181.577 kb on - strand, within AZOBR_RS00910at 181.675 kb on + strand, within AZOBR_RS00910at 181.741 kb on + strand, within AZOBR_RS00910at 181.742 kb on - strand, within AZOBR_RS00910at 181.742 kb on - strand, within AZOBR_RS00910at 181.828 kb on + strand, within AZOBR_RS00910at 182.198 kb on - strandat 182.316 kb on + strandat 182.316 kb on + strandat 182.316 kb on + strandat 182.317 kb on - strandat 182.317 kb on - strandat 182.317 kb on - strandat 183.428 kb on + strandat 183.654 kb on + strandat 183.654 kb on + strandat 183.654 kb on + strandat 183.654 kb on + strandat 183.654 kb on + strandat 183.654 kb on + strandat 183.655 kb on - strandat 183.766 kb on - strand, within AZOBR_RS00920at 183.766 kb on - strand, within AZOBR_RS00920at 183.771 kb on + strand, within AZOBR_RS00920at 183.771 kb on + strand, within AZOBR_RS00920at 183.772 kb on - strand, within AZOBR_RS00920at 183.772 kb on - strand, within AZOBR_RS00920at 183.772 kb on - strand, within AZOBR_RS00920at 184.032 kb on + strand, within AZOBR_RS00920at 184.032 kb on + strand, within AZOBR_RS00920at 184.032 kb on + strand, within AZOBR_RS00920at 184.033 kb on - strand, within AZOBR_RS00920at 184.105 kb on - strand, within AZOBR_RS00920at 184.105 kb on - strand, within AZOBR_RS00920

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Cycloserine 0.125 mg/ml
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181,484 - AZOBR_RS00910 0.17 -2.7
181,576 + AZOBR_RS00910 0.26 +0.2
181,576 + AZOBR_RS00910 0.26 -0.5
181,577 - AZOBR_RS00910 0.26 -1.0
181,675 + AZOBR_RS00910 0.37 -0.4
181,741 + AZOBR_RS00910 0.44 -0.9
181,742 - AZOBR_RS00910 0.44 -0.2
181,742 - AZOBR_RS00910 0.44 -4.6
181,828 + AZOBR_RS00910 0.53 -3.3
182,198 - -2.3
182,316 + +0.3
182,316 + +0.5
182,316 + +0.6
182,317 - -0.3
182,317 - +0.1
182,317 - -0.9
183,428 + +3.1
183,654 + +0.7
183,654 + +1.3
183,654 + +0.3
183,654 + +1.0
183,654 + +0.9
183,654 + -1.1
183,655 - +0.2
183,766 - AZOBR_RS00920 0.14 +0.1
183,766 - AZOBR_RS00920 0.14 +2.3
183,771 + AZOBR_RS00920 0.14 -3.3
183,771 + AZOBR_RS00920 0.14 -5.0
183,772 - AZOBR_RS00920 0.14 -0.4
183,772 - AZOBR_RS00920 0.14 -0.4
183,772 - AZOBR_RS00920 0.14 +1.1
184,032 + AZOBR_RS00920 0.34 -0.2
184,032 + AZOBR_RS00920 0.34 -0.2
184,032 + AZOBR_RS00920 0.34 +0.1
184,033 - AZOBR_RS00920 0.34 -0.6
184,105 - AZOBR_RS00920 0.40 +0.6
184,105 - AZOBR_RS00920 0.40 +0.2

Or see this region's nucleotide sequence